Job Description P77334 Confidence 100.00% Date Thu Jan 5 12:27:56 GMT 2012 Rank 2 Aligned Residues 369 % Identity 22% Template c3gfzB_ PDB info PDB header:hydrolase, signaling protein Chain: B: PDB Molecule:klebsiella pneumoniae blrp1; PDBTitle: klebsiella pneumoniae blrp1 ph 6 manganese/cy-digmp complex Resolution 2.05 Å

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		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.			.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.						.	.
Predicted Secondary structure																																.	.																																										.	.	.	.	.
Query SS confidence																																.	.																																										.	.	.	.	.
Query Sequence		L	R	I	L	A	N	T	D	S	I	T	G	L	P	N	R	N	A	M	Q	D	L	I	D	H	A	I	N	H	A	.	.	D	N	N	K	V	G	V	V	Y	L	D	L	D	N	F	K	K	V	N	D	A	Y	G	H	L	F	G	D	Q	L	L	R	D	V	S	L	A	I	L	S	C	.	.	.	.	.	L	E
Query Conservation																																.	.																																										.	.	.	.	.
Alig confidence																																.	.																					.	.																				.	.	.	.	.
Template Conservation																																																						.	.
Template Sequence		L	T	T	L	I	Y	R	S	Q	V	H	P	D	R	P	P	V	D	L	D	A	L	V	H	R	A	S	S	K	N	L	P	L	G	I	T	G	I	L	L	F	N	G	L	Q	F	F	Q	V	L	E	G	.	.	T	E	E	A	L	E	S	L	F	S	E	I	Q	S	D	P	R	H	R	D	V	V	E	L	M	R
Template Known Secondary structure													T	T	S																				T									S	S									.	.														T		T	T
Template Predicted Secondary structure																																																						.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.			.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	D	Q	V	L	A	R	P	G	G	D	E	F	L	V	L	A	S	N	T	S	Q	S	A	L	E	A	M	A	S	R	I	L	T	R	L	R	L	P	F	R	I	G	L	I	E	V	Y	T	S	C	S	V	G	I	A	L	S	P	E	H	G	S	D	S	T	A	I	I	R	H	A	D	T	A	M	Y	T	A	K
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	Y	S	A	Y	R	R	F	H	G	T	G	M	R	I	L	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	F	E	T	D	G	A	L	E	E	I	L	R	F	S	T	F	G	V	T	E	P	V	N	D	R	M	F	R	L	L	S	A	F
Template Known Secondary structure					S	S		S			S	S	S						G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G			T	T														S	S		G	G	G	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.																												.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.		.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450		.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure																																																.																				.
Query SS confidence																																																.																				.
Query Sequence		E	G	G	R	G	Q	F	C	V	F	T	P	E	M	N	Q	R	V	F	E	Y	L	W	L	D	T	N	L	R	K	A	L	E	N	D	Q	L	V	I	H	Y	Q	P	K	I	T	.	W	R	G	E	V	R	S	L	E	A	L	V	R	W	Q	S	P	E	R	.	G	L	I	P	P	L	D	F	I	S	Y	A	E
Query Conservation																																																.																				.
Alig confidence																			.	.	.	.	.	.																								.																				.
Template Conservation																			.	.	.	.	.	.
Template Sequence		I	A	D	G	G	R	Y	C	L	P	E	P	L	Q	P	S	R	.	.	.	.	.	.	W	M	M	M	A	P	Q	H	L	P	G	Q	P	C	Q	F	A	L	Q	A	I	V	E	P	A	K	K	R	V	S	S	F	E	A	L	I	R	S	P	T	G	G	S	P	V	E	M	F	A	A	I	A	A	E	D	R	Y
Template Known Secondary structure					G	G	G	G				G	G	G		G	G	G	.	.	.	.	.	.										T	T	S	S											T	T	T	T												T	T	S									T	S		G	G	G
Template Predicted Secondary structure																			.	.	.	.	.	.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.							150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.		.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		E	S	G	L	I	V	P	L	G	R	W	V	I	L	D	V	V	R	Q	V	A	K	W	R	D	K	G	I	N	L	R	V	A	V	N	I	S	A	R	Q	L	.	A	D	Q	T	I	F	T	A	L	K	Q	V	L	Q	E	L	N	F	E	Y	C	P	I	D	V	E	L	T	E	S	C	L	I	E	N	D	E	L
Query Conservation																																											.
Alig confidence																			.	.	.	.	.	.	.	.																	.
Template Conservation																			.	.	.	.	.	.	.	.
Template Sequence		R	F	D	L	E	S	K	A	Y	A	F	A	L	A	G	Q	L	.	.	.	.	.	.	.	.	P	L	G	K	H	Q	L	A	I	N	L	L	P	G	S	L	Y	H	H	P	D	A	V	G	W	L	M	D	S	L	L	A	A	G	L	R	P	D	Q	V	L	I	E	V	T	E	T	E	V	I	T	C	F	D	Q
Template Known Secondary structure							T											T	.	.	.	.	.	.	.	.	T			S														S	S	S	S												T	T			G	G	G												T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.									230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		543	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	S	V	I	Q	Q	F	S	Q	L	G	A	Q	V	H	L	D	D	F	G	T	G	Y	S	S	L	S	Q	L	A	R	F	P	I	D	A	I	K	L	D	Q	V	F	V	R	D	I	H	K	Q	P	V	S	Q	S	L	V	R	A	I	V	A	V	A	Q	A	L	N	L	Q	V	I	A	E	G	V	E	S	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	R	K	V	L	K	A	L	R	V	A	G	M	K	L	A	I	D	D	F	G	A	G	Y	S	G	L	S	L	L	T	R	F	Q	P	D	K	I	K	V	D	A	E	L	V	R	D	I	H	I	S	G	T	K	Q	A	I	V	A	S	V	V	R	C	C	E	D	L	G	I	T	V	V	A	E	G	V	E	T	L
Template Known Secondary structure													T									T	S	S	S			S	T								S										T	T	G	G	G	B																		T										S
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		623	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	D	A	F	L	T	K	N	G	I	N	E	R	Q	G	F	L	F	A	K	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	W	C	W	L	Q	S	V	G	I	R	L	F	Q	G	F	L	F	S	R	P
Template Known Secondary structure										T	T						S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions