Job Description P77334 Confidence 99.36% Date Thu Jan 5 12:27:56 GMT 2012 Rank 59 Aligned Residues 137 % Identity 10% Template c3gdiB_ PDB info PDB header:transcription Chain: B: PDB Molecule:period circadian protein homolog 2; PDBTitle: mammalian clock protein mper2 - crystal struture of a pas2 domain fragment Resolution 2.40 Å

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		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		E	A	H	S	A	I	V	I	L	D	S	R	G	N	I	Q	R	F	N	R	L	C	E	D	Y	T	G	L	K	E	H	D	V	I	G	Q	S	V	F	K	L	F	M	S	R	R	E	A	A	A	S	R	R	N	N	R	V	F	F	R	S	G	N	A	.	Y	E	V	E	L	W	I	P	T	C	K	G	Q	R	L
Query Conservation																																																																		.
Alig confidence																																																																		.
Template Conservation
Template Sequence		E	K	R	I	F	T	T	T	H	T	P	N	C	L	F	Q	A	V	D	E	R	A	V	P	L	L	G	Y	L	P	Q	D	L	I	E	T	P	V	L	V	Q	L	H	P	S	D	R	P	L	M	L	A	I	H	K	K	I	L	Q	A	G	G	Q	P	F	D	Y	S	P	I	R	F	R	T	R	N	G	E	Y	I
Template Known Secondary structure		G	G									T	T	S	B						T	T						S							T	T	S	B	T	G	G	G	B		T	T	T	T	T													T	T													T	T	S
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		F	L	F	R	N	K	F	V	H	S	G	.	S	G	K	N	E	I	F	L	I	C	S	G	T	D	I	T	E	E	R	R	A	Q	E	R	L	R	I	L	A	N	T	D	S	I	T	G	L	P	N	R	N	A	M	Q	D	L	I	D	H	A	I	N	H
Query Conservation													.
Alig confidence													.																							.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.
Template Sequence		T	L	D	T	S	W	S	S	F	I	N	P	W	S	R	K	I	S	F	I	I	G	R	H	K	V	R	V	G	P	L	N	E	D	.	.	.	.	.	.	V	F	A	A	P	P	C	P	E	P	S	V	Q	E	L	T	E	Q	I	H	R	L	L	M	Q
Template Known Secondary structure													T	T	T																	S	S	S		.	.	.	.	.	.	T	T	S			S	S																T	T	S
Template Predicted Secondary structure																																				.	.	.	.	.	.
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440							.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions