Job Description P77334 Confidence 61.65% Date Thu Jan 5 12:27:56 GMT 2012 Rank 362 Aligned Residues 132 % Identity 12% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.										.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.		.	.	.	.	.	.	.										560	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.																					.								.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.																					.								.	.	.	.	.	.	.	.	.
Query Sequence		A	D	Q	T	I	F	T	A	L	K	Q	V	L	Q	E	L	N	F	E	Y	C	P	I	D	V	E	L	T	.	.	.	.	.	.	.	.	.	E	S	C	L	I	E	N	D	E	L	A	L	S	V	I	Q	Q	F	S	Q	.	L	G	A	Q	V	H	L	.	.	.	.	.	.	.	.	.	D	D	F	G	T	G
Query Conservation																														.	.	.	.	.	.	.	.	.																					.								.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.																					.								.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	D	P	K	S	L	A	E	A	A	R	I	G	E	A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	R	V	P	V	T	V	K	X	R	L	G	L	E	G	K	E	T	Y	R	G	L
Template Known Secondary structure		S															T	T		S										S							T		G	G	G	G	G	G														T	T		S	S								S		B	T	T
Template Predicted Secondary structure
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		566	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.					600	.	.	.	.	.	.	.	.	.	610		.	.	.	.	.	.	.	.		.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.												.									.
Query SS confidence																																				.	.	.	.												.									.
Query Sequence		Y	S	S	L	S	Q	L	A	R	F	P	I	D	A	I	K	L	D	Q	V	F	V	R	D	I	H	K	Q	P	V	S	Q	S	L	.	.	.	.	V	R	A	I	V	A	V	A	Q	A	L	.	N	L	Q	V	I	A	E	G	.	V	E	S	A	K	E	D	A	F	L	T	K	N	G	I	N	E	R	Q
Query Conservation																																				.	.	.	.												.									.
Alig confidence																																				.	.	.	.												.									.													.
Template Conservation																																																																									.
Template Sequence		A	Q	S	V	E	A	X	A	E	A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	G	G	I	R	S	L	E	E	A	L	F	H	L	K	.	R	V	D	G	V	X
Template Known Secondary structure											T	T									S		B		T	T	S		T	T	G	G	G	T	S	S															T	T	S						S	S			S									T	.	T	S	S
Template Predicted Secondary structure																																																																									.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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