 |
Job Description | P77334 | Confidence | 84.76% | Date | Thu Jan 5 12:27:56 GMT 2012 |
Rank | 229 | Aligned Residues | 104 |
% Identity | 15% | Template | c2v82A_ |
PDB info |
PDB header:lyase | Chain: A: PDB Molecule:2-dehydro-3-deoxy-6-phosphogalactonate aldolase; |
PDBTitle: kdpgal complexed to kdpgal
|
Resolution | 2.1 Å |
|
 |
  |   |
544 | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . | . | . | . | . | . | . | 610 | |
|
. | . | . | . | . | . | . | . | . | 620 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . |
|
|  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | S | V | I | Q | Q | F | S | Q | L | G | A | Q | V | H | L | D | D | F | G | T | G | Y | S | S | L | S | Q | L | A | R | F | P | I | D | A | I | K | L | D | Q | V | F | V | R | D | I | H | K | Q | P | V | S | Q | S | L | V | R | A | I | V | A | V | A | Q | A | L | . |
. |
N | L | Q | V | I | A | E | G | V | E | S |
Query Conservation |   |
  |   |   |   |   |   |
|   |   |   |
|   |   |
|   |
|
|
|
|
|   |
|   |   |
|   |   |   |
|   |   |
|   |   |
|   |
|
|
|
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   | . | . |
|
|   |
|
|
|
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
| . | . |
|   |
|   |   |
|   |   |   |
|   |   |   |
|
|
|   |
|   |   |   |
|   |   |   |   |   | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |
|
|
|   |
Template Sequence |   |
S | E | V | I | R | R | A | V | G | Y | G | X | T | V | C | P | G | . |
. |
C | A | T | A | T | E | A | F | T | A | L | E | A | G | A | Q | A | L | K | I | F | P | S | S | A | F | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
P | Q | Y | I | K | A | L | K | A | V | L | P | S | D | I | A | V | F | A | V | G | G | V | T |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T | T |
|  |  |  |
|  | . | . |  |
| S |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  | T | T |  |  |  |  |
| . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  | T | T | S |
| T | T |
|  |  |  |  |  | S | S |
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  | . | . |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
91 | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | |
|
. | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . |
  |
  |   |
622 | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | |
|
. | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  | . | . |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | K | E | D | A | F | L | T | K | N | G | I | N | E | R | Q | . |
. |
G | F | L | F | A | K | P | M | P | A | V | A | F | E | R | W | Y | K | R | Y | L | K |
Query Conservation |   |
  |   |   |   |   |   |
|   |   |   |
|   |
|   |   |
| . | . |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|   |   |   |
|   |   |
|
|   |   |
|   |
|
|
|   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
P | E | N | L | A | Q | W | I | D | A | G | C | A | G | A | G | L | G | S | D | L | Y | R | A | G | Q | S | V | E | R | T | A | Q | Q | A | A | A | F | V | K |
Template Known Secondary structure |   |
T | T | T |  |  |  |  |  |  |  | T |
| S |  |  |  |  |
| T | T | T |
|
| T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
159 | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|