 |
Job Description | P77334 | Confidence | 75.31% | Date | Thu Jan 5 12:27:56 GMT 2012 |
Rank | 292 | Aligned Residues | 66 |
% Identity | 11% | Template | c1lwhA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:4-alpha-glucanotransferase; |
PDBTitle: crystal structure of t. maritima 4-alpha-glucanotransferase
|
Resolution | 2.60 Å |
|
 |
  |   |
538 | . | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . | . | . | . | . | . | . | 610 | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  | . | . | . | . | . | . |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | N | D | E | L | A | L | S | V | I | Q | Q | F | S | Q | L | G | A | Q | V | H | L | . |
. |
. |
. |
. |
. |
D | D | F | G | T | G | Y | S | S | L | S | Q | L | A | R | F | P | I | D | A | I | K | L | D | Q | V | F | V | R | D | I | H | K | Q | P | V | S | Q | S | L | V | R | A | I | V | A | V | A | Q | A | L | N |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |
| . | . | . | . | . | . |
|
|
|
|   |
|   |   |
|   |   |   |
|   |   |
|   |   |
|   |
|
|
|
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |
|
|   |   |   |
|
|
|
|   |   |
|
|
|   |   |
|   |
|   |
|
|   |   |   |   |   |   |   |
|
|   | . | . | . | . | . | . | . | . |   |   |
|   |   |   |
|
|   |   |   | . | . | . | . | . |
|
|   |   |
| . | . | . |
|
|   |
|
|   |   |   |
|   |   |
|
Template Sequence |   |
G | D | F | R | G | L | K | N | A | V | S | Y | L | K | E | L | G | I | D | F | V | W | L | M | P | V | F | S | S | I | S | F | H | G | Y | D | . |
. |
. |
. |
. |
. |
. |
. |
V | V | D | F | Y | S | F | K | A | E | Y | . |
. |
. |
. |
. |
G | S | E | R | E | . |
. |
. |
F | K | E | M | I | E | A | F | H | D | S | G |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  | T |  |  |  |  |  |  | T | T |
| S |  |  |  |  |
|
|
|  |  |
| S | S | S | S |
|
| S | . | . | . | . | . | . | . | . |
| S |  |  |  |  |  |
| G | G | G | . | . | . | . | . |
|
|  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | 60 | . | . | . | . | . | . | |
|
|
|
|
. | . | . | 70 | . | |
|
|
. | . | . | . | . | . | . | . | 80 | . | . | . |
  |
  |   |
612 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
Query Sequence |   |
L | Q | V | I | A | E | G | V |
Query Conservation |   |
|   |
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|
|
|   |
|
Template Sequence |   |
I | K | V | V | L | D | L | P |
Template Known Secondary structure |   |
|  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
  |   |
84 | . | . | . | . | . | 90 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|