Job Description P77334 Confidence 38.47% Date Thu Jan 5 12:27:56 GMT 2012 Rank 472 Aligned Residues 184 % Identity 11% Template c1kkoB_ PDB info PDB header:lyase Chain: B: PDB Molecule:3-methylaspartate ammonia-lyase; PDBTitle: crystal structure of citrobacter amalonaticus2 methylaspartate ammonia lyase Resolution 1.33 Å

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		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.					.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
Predicted Secondary structure																																									.																	.	.	.	.
Query SS confidence																																									.																	.	.	.	.
Query Sequence		G	L	I	P	P	L	D	F	I	S	Y	A	E	E	S	G	L	I	V	P	L	G	R	W	V	I	L	D	V	V	R	Q	V	A	K	W	R	D	K	.	G	I	N	L	R	V	A	V	N	I	S	A	R	Q	L	A	.	.	.	.	D	Q	T	I	F	T	A	L	K	Q	V	L	Q	E	L	N	F	E	Y	C
Query Conservation																																									.																	.	.	.	.
Alig confidence																																									.																	.	.	.	.
Template Conservation
Template Sequence		D	V	L	P	H	A	L	I	N	N	V	E	E	K	L	G	F	K	G	E	K	L	R	E	Y	V	R	W	L	S	D	R	I	L	S	L	R	S	S	P	R	Y	H	P	T	L	H	I	D	V	Y	G	T	I	G	L	I	F	D	X	D	P	V	R	C	A	E	Y	I	A	S	L	E	K	E	A	Q	G	L	P
Template Known Secondary structure		S					T	T										T	T	S																			S	S	T	T										T	T						T	T	T												T	T	G	G	G	T	T	S
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		526	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.							.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.		.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.																								.
Query SS confidence																														.	.	.	.	.	.																								.
Query Sequence		P	I	D	V	E	L	T	E	S	C	L	I	E	N	D	E	L	A	L	S	V	I	Q	Q	F	S	Q	L	.	.	.	.	.	.	G	A	Q	V	H	L	D	D	F	G	T	G	Y	S	S	L	S	Q	L	A	R	F	P	.	I	D	A	I	K	L	D	Q	V	F	V	R	D	I	H	K	Q	P	V	S	Q	S
Query Conservation																														.	.	.	.	.	.																								.
Alig confidence				.	.	.																								.	.	.	.	.	.																								.																	.	.	.	.	.	.
Template Conservation				.	.	.																																																																						.	.	.	.	.	.
Template Sequence		L	Y	.	.	.	I	E	G	P	V	D	A	G	N	K	P	D	Q	I	R	X	L	T	A	I	T	K	E	L	T	R	L	G	S	G	V	K	I	V	A	D	E	W	C	N	T	Y	Q	D	I	V	D	F	T	D	A	G	S	C	H	X	V	Q	I	K	T	P	D	L	G	G	I	H	N	.	.	.	.	.	.
Template Known Secondary structure				.	.	.								S	S																			T									T	T			S										T	T			S						G	G	G	G	S	S	T			.	.	.	.	.	.
Template Predicted Secondary structure				.	.	.																																																																						.	.	.	.	.	.
Template SS confidence
		270	.				.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		599	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.			.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence		L	V	R	A	I	V	A	V	A	Q	A	L	N	L	Q	V	I	A	E	G	.	.	V	E	S	A	K	E	D	A	F	L	T	K	N	G	I	N	E	R	Q	G	F	L	F	A	K	P
Query Conservation																						.	.
Alig confidence		.																				.	.
Template Conservation		.
Template Sequence		.	I	V	D	A	V	L	Y	C	N	K	H	G	X	E	A	Y	Q	G	G	T	C	N	E	T	E	I	S	A	R	T	C	V	H	V	A	L	A	A	R	P	X	R	X	L	I	K	P
Template Known Secondary structure		.											T	T									T	T	S																		S						S
Template Predicted Secondary structure		.
Template SS confidence
			341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions