Return to main results Retrieve Phyre Job Id

Job DescriptionP0A8F8
Confidence100.00%DateThu Jan 5 11:07:44 GMT 2012
Rank15Aligned Residues436
% Identity19%Templatec4a4zA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:antiviral helicase ski2; PDBTitle: crystal structure of the s. cerevisiae dexh helicase ski2 bound to2 amppnp
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40.........50...... ...60.........70.........80...
Predicted Secondary structure 

















...








Query SS confidence 

















































. . .


























Query Sequence  LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADL. . . QRPTMVLAPNKTLAAQLYGEMKEFFPE
Query Conservation        
   
  

  
   
       

   





  
   
   ...  
 


 
   
  
   

      
Alig confidence 




















.....























...


























Template Conservation      
 

 

  

  
   ..... 



 







 


 

   
    




 
 






   
   
  
Template Sequence  RSWPFELDTFQKEAVYHLEQG. . . . . DSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFVN
Template Known Secondary structure 


SS


TT.....


TTS
STT
S
GGGTT


Template Predicted Secondary structure 







.....















Template SS confidence 















































































   324.....330.........340.... .....350.........360.........370.........380.........390........
 
   84.....90.........100.........110.........120.........130.........140.........150.........160...
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  NAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTV
Query Conservation    
                                    
             


 
   
               
 
Alig confidence  ..








....................................
































Template Conservation  ..


 


  .................................... 
  
 


 
 
 
   
      
  
  

Template Sequence  . . IGLITGDVQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . INPDANCLIMTTEILRSMLYRGADLIRDVEFVI
Template Known Secondary structure  ..
SS
....................................
TTSST
SGGGG
Template Predicted Secondary structure  ..




....................................












Template SS confidence 















































































   401........ 410.........420.........430.........440..
 
   164.....170.........180.........190.........200.........210.........220.........230.........240...
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  GMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI
Query Conservation   

 
       
                      

  


                                      
Alig confidence 




.....


















..
















































Template Conservation 


 
..... 
 
  

   
  
  
 ..    

 




 
    
 

          
    




       
Template Sequence  FDEVH. . . . . YVNDQDRGVVWEEVIIMLP. . QHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAK
Template Known Secondary structure 

TT.....


TT
TT

S
..TT



TTT


SS
SS
T
Template Predicted Secondary structure 
.....






..























Template SS confidence 















































































   443.... ..450.........460...... ...470.........480.........490.........500.........510.....
 
   244.....250.........260.........270.........280.........290.........300.........310.........320...
Predicted Secondary structure 













Query SS confidence 















































































Query Sequence  YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP
Query Conservation                         
                                                        
Alig confidence 
























.......................................................
Template Conservation       
                   .......................................................
Template Sequence  KELIPVINQNSEFLEANFRKHKEIL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T
TT

B
.......................................................
Template Predicted Secondary structure 












.......................................................
Template SS confidence 















































































   516...520.........530.........540
 
   324.....330.........340.........350.........360.........370.........380.........390.........400...
Predicted Secondary structure 



















Query SS confidence 















































































Query Sequence  TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK
Query Conservation                                                                                  
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................................................................................
Template Predicted Secondary structure  ................................................................................
Template SS confidence 















































































  
 
   404.....410.........420.........430.........440.........450.........460.........470....
Predicted Secondary structure 

























.........
Query SS confidence 






































































. . . . . . . . .
Query Sequence  SGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR. . . . . . . . .
Query Conservation                                 
   
                                   .........
Alig confidence  ....................

















..






























.........
Template Conservation  ....................           

  
  ..    
 


  

   
  
  
    
    
   
   
Template Sequence  . . . . . . . . . . . . . . . . . . . . NDGPSKKTWPEIVNYLRK. . RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMF
Template Known Secondary structure  ....................




TT..TT

S
S
TTTT




Template Predicted Secondary structure  ....................




..











Template SS confidence 















































































   541........550........ .560.........570.........580.........590........
 
   475....480.........490.........500.........510.........520....
Predicted Secondary structure  ..............................



























Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

















































Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD
Query Conservation  ..............................                 
      


 
    




     

  
  
Alig confidence  ..............................






































.









Template Conservation         
            
   
  

  

 

    
  

 

  
 






 


 


 
.
  


    
Template Sequence  IEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLP. TRTVIFSSIR
Template Known Secondary structure  TTS
T
TTT
TTS
TT

S
TS



.
SS
S
Template Predicted Secondary structure 



















.





Template SS confidence 















































































   664.....670.........680.........690.........700.........710.........720.........730.. .......740..
 
   525. ...530.........540...... ...550.........560.........570.........580.........590.......
Predicted Secondary structure 

....






...






Query SS confidence 

. . . .



















. . .


















































Query Sequence  KE. . . . GFLRSERSLIQTIGRAARNV. . . NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL
Query Conservation    ....          

 

  
  ...                                                   
Alig confidence 

....



















...


















































Template Conservation 
 

     
   
  







 
 
  
 


              
       
 
 
   
  




       
Template Sequence  KHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRV
Template Known Secondary structure  TT

GGG

TTT
SS

SS


S












TT
Template Predicted Secondary structure 





































Template SS confidence 















































































   743......750.........760.........770.........780.........790.........800.........810.........820..
 
   598.600.........610.........620.........630.........640.........650
Predicted Secondary structure 



Query SS confidence 




















































Query Sequence  ALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL
Query Conservation                                                       
Alig confidence 




















































Template Conservation        

               
                             
Template Sequence  EEMIKYSFSENAKETLQPEHEKQIKVLQEELQTKFLELMLAYKEATVNLMQEM
Template Known Secondary structure  TS

Template Predicted Secondary structure 
Template SS confidence 




















































   823......830.........840.........850.........860.........870.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions