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Job DescriptionP0A8F8
Confidence99.96%DateThu Jan 5 11:07:44 GMT 2012
Rank29Aligned Residues354
% Identity18%Templatec3oiyB_
PDB info PDB header:isomeraseChain: B: PDB Molecule:reverse gyrase helicase domain; PDBTitle: helicase domain of reverse gyrase from thermotoga maritima
Resolution2.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50...... ...60.........70.........80.
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Query Sequence  FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADL. . . QRPTMVLAPNKTLAAQLYGEMKEFF
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Template Sequence  FKKKFGKDLTGYQRLWAKRIVQG. . . . . KSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLA
Template Known Secondary structure  SS


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   71........80.........90... ......100.........110.........120.........130.........140.....
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  PENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHL
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Template Sequence  DEKVKIFGFYSSM. . . . . . . . . . . . . . . . . . . . . . . . KKEEKEKFEKSFEEDDYHILVFSTQFVSKNR. . EKLSQKRFDF
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   146...150........ .160.........170.........180......... 190.........
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  TVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF
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Template Sequence  VFVDDVD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S
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   200......
 
   242.......250.........260.........270.........280.........290.........300.........310.........320.
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Query Sequence  TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP
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   322.......330.........340.........350.........360.........370.........380.........390.........400.
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Query Sequence  PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYEL
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Template Sequence  . . . . . . . . . . . . . AVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGI. . . . . . LVVSSATAKPRGIRP
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   207..210.........220.........230.........240.........250.. .......260.......
 
   402.......410.........420.........430.........440.........450.........460.........470.........480.
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Query Sequence  EKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID
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Template Sequence  LLFRDLLNFTVGRLVSVARNITHVRISSRSKEKLVELLEIF. . . RDGILIFAQTEEEGKELYEYLKRFKFNVGETW. . . .
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   268.270.........280.........290.........300........ .310.........320.........330.........340
 
   482.......490.........500.........510.........520.........530.........540........ .550........
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Query Sequence  TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG. . . KAILYGDKIT
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Template Sequence  . SEFEKNFEDFKVGKINILIGVQAYYVDLPER. IKYVIFWGTPS. . . GPDVYTYIQASGRSSRILNGVLVKGVSVIFEED
Template Known Secondary structure  .S
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   341........350.........360.........370. ........380.. .......390.........400.........410.....
 
   559560.........570...
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Query Sequence  PSMAKAIGETERRRE
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Template Sequence  EEIFESLKTRLLLIA
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   492.......500......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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