Job Description P0A8F8 Confidence 99.63% Date Thu Jan 5 11:07:44 GMT 2012 Rank 96 Aligned Residues 163 % Identity 15% Template c3iuyB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:probable atp-dependent rna helicase ddx53; PDBTitle: crystal structure of ddx53 dead-box domain Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.					.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.
Query SS confidence																																																		.	.	.	.
Query Sequence		S	A	F	K	P	S	G	D	Q	P	E	A	I	R	R	L	E	E	G	L	E	D	G	L	A	H	Q	T	L	L	G	V	T	G	S	G	K	T	F	T	I	A	N	V	I	A	D	L	.	.	.	.	Q	R	P	T	M	V	L	A	P	N	K	T	L	A	A	Q	L	Y	G	E	M	K	E	F	F	P	E	N
Query Conservation																																																		.	.	.	.
Alig confidence																					.	.	.	.	.																									.	.	.	.
Template Conservation																					.	.	.	.	.
Template Sequence		G	I	L	K	P	T	P	I	Q	S	Q	A	W	P	I	I	L	Q	G	.	.	.	.	.	I	D	L	I	V	V	A	Q	T	G	T	G	K	T	L	S	Y	L	M	P	G	F	I	H	L	D	S	N	G	P	G	M	L	V	L	T	P	T	R	E	L	A	L	H	V	E	A	E	C	S	K	Y	S	Y	K	G
Template Known Secondary structure		T			S														T	T	.	.	.	.	.									T	T	S															T					S						S	S																	T	T
Template Predicted Secondary structure																					.	.	.	.	.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.						.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	E	Y	F	V	S	Y	Y	D	Y	Y	Q	P	E	A	Y	V	P	S	S	D	T	F	I	E	K	D	A	S	V	N	E	H	I	E	Q	M	R	L	S	A	T	K	A	M	L	E	R	R	D	V	V	V	V	A	S	V	S	A	I	Y	G	L	G	D	P	D	L	Y	L	K	M	M	L	H	L	T	V	G
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	S	I	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Y	G	V	D	I	I	I	A	T	P	G	R	L	N	D	L	Q	M	N	N	S	V	N	L	R	S	I	T	Y	L	V	I
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S															T	T		S			T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		333	.	.	.	.																																											.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	I	D	Q	R	A	I	L	R	R	L	A	E	L	Q	Y	A	R	N	D	Q	A	F	Q	R	G	T	F	R	V	R	G	E	V	I	D	I	F	P	A	E	S	D	D	I	A	L	R	V	E	L	F	D	E	E	V	E	R	L	S
Query Conservation
Alig confidence						.	.	.	.	.																			.	.
Template Conservation						.	.	.	.	.																			.	.
Template Sequence		D	E	A	D	.	.	.	.	.	K	M	L	D	M	E	F	E	P	Q	I	R	K	I	L	L	D	V	.	.	R	P	D	R	Q	T	V	M	T	S	A	T	W	P	D	T	V	R	Q	L	A	L	S	Y	L	K	D	P	M	I	V	Y
Template Known Secondary structure						.	.	.	.	.					T	T												S	.	.		S	S								S	S														S	S
Template Predicted Secondary structure						.	.	.	.	.																			.	.
Template SS confidence
		385	.	.	.						.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.			.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions