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Job DescriptionP0A8F8
Confidence99.96%DateThu Jan 5 11:07:44 GMT 2012
Rank30Aligned Residues357
% Identity18%Templatec3i5yA_
PDB info PDB header:hydrolase/rnaChain: A: PDB Molecule:atp-dependent rna helicase mss116; PDBTitle: structure of mss116p bound to ssrna containing a single 5-bru and amp-2 pnp
Resolution2.49 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20.........30.........40.........50...... ...60.........70........
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Query Sequence  SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADL. . . . . . . . . . QRPTMVLAPNKTLAAQLYGEMK
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Template Sequence  EFPGLTPVQQKTIKPI. . . LSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVK
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SS

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TTS
TTTSSTTS


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   125....130.........140 .........150.........160.........170.........180.........190.........200.
 
   7980.........90.........100.........110.........120.........130.........140.........150 .......
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Query Sequence  EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGD. PDLYLKM
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Template Conservation       ......................                                 
                   
Template Sequence  KIHDM. . . . . . . . . . . . . . . . . . . . . . NYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFR
Template Known Secondary structure  T......................
GGGGGS

TTS


S

T
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   202.... ...210.........220.........230.........240.........250.........
 
   158.160.........170.........180.........190.........200.........210.........220.........230.......
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Query Sequence  MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVST
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Template Sequence  FVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAH
Template Known Secondary structure  T

TTSTTT
SS
TT

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TTGGG

SSSS
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SS
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   260.........270.........280.........290.........300.........310.........320.........330.........
 
   238.240.........250.........260.........270.........280.........290.........300.........310.......
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Query Sequence  IPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG
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Template Sequence  ERI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT.............................................................................
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   340..
 
   318.320.........330.........340.........350.........360.........370.........380.........390.......
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Query Sequence  PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   398.400.........410.........420.........430.........440.........450.........460....... ..470....
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Query Sequence  NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE. . . EHGERVR
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Template Sequence  . . . . . . . . . . . . . . . . . . DQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPIL
Template Known Secondary structure  ..................SSSTTTT


SSTTTS
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   343......350.........360.........370.........380.........390.........400....
 
   475....480.........490.........500.........510.........520.........530.........540.........550. ..
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Query Sequence  YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI. LY
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Template Sequence  EFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPS. . . . . ELANYIHRIGRTARSGKEGSSVLF
Template Known Secondary structure  STTS

SS
GGGTSS


TT

S

S.....STTTSS
TT

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   405....410.........420.........430.........440.........450..... ....460.........470.........
 
   554.....560.........570
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Query Sequence  GDKITPSMAKAIGETER
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Template Conservation      
      
     
Template Sequence  ICKDELPFVRELEDAKN
Template Known Secondary structure  GGG
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   480.........490......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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