Job Description P0A8F8 Confidence 100.00% Date Thu Jan 5 11:07:44 GMT 2012 Rank 20 Aligned Residues 435 % Identity 19% Template c3hjhA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair-coupling factor; PDBTitle: a rigid n-terminal clamp restrains the motor domains of the bacterial2 transcription-repair coupling factor Resolution 1.95 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	L	A	H	Q	T	L	L	G	V	T	G	S	G	K	T	F	T	I	A	N	V	I	A	D	L	Q	R	P	T	M	V	L	A	P	N	K	T	L	A	A	Q	L	Y	G	E	M	K	E	F	F	P	E	N	A	V	E	Y	F	V	S	Y	Y	D	Y	Y	Q	P	E	A	Y	V	P	S	S	D	T	F	I
Query Conservation
Alig confidence																																																								.						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	A	G	E	Q	R	L	L	G	E	L	T	G	A	A	C	A	T	L	V	A	E	I	A	E	R	H	A	G	P	V	V	L	I	A	P	D	M	Q	N	A	L	R	L	H	D	E	I	S	Q	F	T	D	Q	.	M	V	M	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	W	E	T	L	P
Template Known Secondary structure		S	T	T										T	T													S	S	S							S	S														T		S	S	.						.	.	.	.	.	.	.	.	.	.	.	.	.					S		T
Template Predicted Secondary structure																																																								.						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70														.	.	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		E	K	D	A	S	V	N	E	H	I	E	Q	M	R	L	S	A	T	K	A	M	L	E	R	R	D	V	V	V	V	A	S	V	S	A	I	Y	G	L	G	D	P	.	D	L	Y	L	K	M	M	L	H	L	T	V	G	M	I	I	D	Q	R	A	I	L	R	R	L	A	E	L	Q	Y	A	R	N	D	Q	A	F
Query Conservation																																												.
Alig confidence																																												.
Template Conservation
Template Sequence		Y	D	S	F	S	P	H	Q	D	I	I	S	S	R	L	S	T	L	Y	Q	L	P	T	M	Q	R	G	V	L	I	V	P	V	N	T	L	M	Q	R	V	C	P	H	S	F	L	H	G	H	A	L	V	M	K	K	G	Q	R	L	S	R	D	A	L	R	T	Q	L	D	S	A	G	Y	R	H	V	D	Q	V	M
Template Known Secondary structure		T		S	S																	G	G	G			S	S											B											T						T	T															T	T					S	S
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	G	T	F	R	V	R	G	E	V	I	D	I	F	P	A	E	S	D	D	I	A	L	R	V	E	L	F	D	E	E	V	E	R	L	S	L	F	D	P	L	T	G	Q	I	V	S	T	I	P	R	F	T	I	Y	P	K	T	H	Y	V	T	P	R	E	R	I	V	Q	A	M	E	E	I	K	E	E	L	A
Query Conservation
Alig confidence																		.
Template Conservation																		.
Template Sequence		E	H	G	E	Y	A	T	R	G	A	L	L	D	L	F	P	.	M	G	S	E	L	P	Y	R	L	D	F	F	D	D	E	I	D	S	L	R	V	F	D	V	D	S	Q	R	T	L	E	E	V	E	A	I	N	L	L	P	A	H	E	F	P	T	D	K	A	A	I	E	L	F	R	S	Q	W	R	D	T	F	E
Template Known Secondary structure		S	T	T						T	T							.	B	T		S	S								T	T										T	T	T	T							S					B		S	S	S	S			S															S
Template Predicted Secondary structure																		.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	R	K	V	L	L	E	N	N	K	L	L	E	E	Q	R	L	T	Q	R	T	Q	F	D	L	E	M	M	N	E	L	G	Y	C	S	G	I	E	N	Y	S	R	F	L	S	G	R	G	P	G	E	P	P	P	T	L	F	D	Y	L	P	A	D	G	L	L	V	V	D	E	S	H	V	T	I	P	Q	I	G
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.																						.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.																						.	.
Template Sequence		V	K	R	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	H	I	Y	Q	Q	V	S	K	G	T	L	P	A	G	I	E	Y	W	Q	P	L	F	F	.	.	.	.	S	E	P	L	P	P	L	F	S	Y	F	P	A	N	T	L	L	V	N	T	G	.	.	D	L	E	T	S	A	E
Template Known Secondary structure				S	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S							T	T				T	T	G	G	G	G	G	G	G	G		.	.	.	.	S	S					G	G	G	G	S		T	T							S	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.																						.	.
Template SS confidence
		237	.	.	240	.																		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.					.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.			.	.	.	290	.	.	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	Y	R	G	D	R	A	R	K	E	T	L	V	E	Y	G	F	R	L	P	S	A	L	D	N	R	P	L	K	F	E	E	F	E	A	L	A	P	Q	T	I	Y	V	S	A	T	P	G	N	Y	E	L	E	K	S	G	G	D	V	V	D	Q	V	V	R	P	T	G	L	L	D	P	I	I	E	V	R	P	V
Query Conservation
Alig confidence																																																													.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.
Template Sequence		R	F	Q	A	D	T	L	A	R	F	E	N	R	G	V	D	P	M	R	P	L	L	P	P	Q	S	L	W	L	R	V	D	E	L	F	S	E	L	K	N	W	P	R	V	Q	L	K	T	E	H	L	P	T	K	A	A	N	A	N	.	.	.	.	.	.	.	.	.	.	L	G	F	Q	K	L	P	D	L	A	V
Template Known Secondary structure															T	T		T	T	S					G	G	G	T	B											T	T	S							S	S						T	T				.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.											.	.	.	.	.	.	.	360	.	.	.
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.		.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		A	T	Q	V	D	D	L	L	S	E	I	R	Q	R	A	A	I	.	N	E	R	V	L	V	T	T	L	T	K	R	M	A	E	D	L	T	E	Y	L	E	E	H	G	E	R	V	R	Y	L	H	S	D	I	D	T	V	E	R	M	E	I	I	R	D	L	R	L	G	E	F	D	V	L	V	G	I	N	L	L	R
Query Conservation																			.
Alig confidence																			.																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	A	Q	Q	K	A	P	L	D	A	L	R	K	F	L	E	T	F	D	G	P	V	V	F	S	V	E	S	E	G	R	R	E	A	L	G	E	L	L	A	R	I	K	I	A	P	Q	R	I	M	R	L	D	E	A	S	D	R	.	.	.	.	.	.	.	.	.	.	.	.	G	R	Y	L	M	I	G	A	A	E
Template Known Secondary structure				S	S	S	S	T	T												S							S		S	S	T	T	T	T	T					G	G	G	T							S		G	G	G			T	T	.	.	.	.	.	.	.	.	.	.	.	.							S
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.													.	.	.	.	.	.	.	.	430	.
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	L	D	M	P	E	V	S	L	V	A	I	L	D	A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	G	F	V	D	T	V	R	N	L	A	L	I	C	E	S	D
Template Known Secondary structure		S					T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.