Job Description P0A8F8 Confidence 96.86% Date Thu Jan 5 11:07:44 GMT 2012 Rank 191 Aligned Residues 89 % Identity 17% Template c3eihB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: crystal structure of s.cerevisiae vps4 in the presence of atpgammas Resolution 3.25 Å

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		17	.	.	20	.	.	.	.	.	.	.	.														.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.									.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.
Query Sequence		Q	P	E	A	I	R	R	L	E	E	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	G	L	A	H	Q	T	L	L	G	V	T	G	S	G	K	T	F	T	I	A	N	V	I	A	D	L	Q	R	P	T	M	V	L	A	P	N	K	T	L	A	A	Q	.	.	.	.	.	.	.	.	L	Y	G
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.																																						.							.	.	.	.	.	.	.	.
Template Conservation																																																																.
Template Sequence		L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	V	K	F	P	H	L	F	K	G	N	R	K	P	T	S	G	I	L	L	Y	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	N	S	T	F	F	S	V	S	S	.	S	D	L	V	S	K	W	M	G	E	S	E	K	L	V	K	Q
Template Known Secondary structure														T						G	G	G			T	T												S	T	T	S												T	T	T									.				T	T	T	S	S	S	S		T	T	T
Template Predicted Secondary structure																																																																.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	K	E	F	F	P	E	N	A	V	E	Y	F	V	S	Y	Y	D	Y	Y	Q	P	E	A	Y	V	P	S	S	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	A	M	A	R	E	N	K	P	S	I	I	F	I	D	Q	V	D	A	L	T	G	T	R	G	E	G	E	S	E
Template Known Secondary structure								T	T	S	S							S	G	G	G	G					S	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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