Job Description P0A8F8 Confidence 98.80% Date Thu Jan 5 11:07:44 GMT 2012 Rank 136 Aligned Residues 157 % Identity 18% Template c2wjyA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 orthorhombic form Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.					.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.
Query SS confidence																																																										.	.	.	.
Query Sequence		M	S	K	P	F	K	L	N	S	A	F	K	P	S	G	D	Q	P	E	A	I	R	R	L	E	E	G	L	E	D	G	L	A	H	Q	T	L	L	G	V	T	G	S	G	K	T	F	T	I	A	N	V	I	A	D	L	.	.	.	.	Q	R	P	T	M	V	L	A	P	N	K	T	L	A	A	Q	L	Y	G	E
Query Conservation																																																										.	.	.	.
Alig confidence																													.	.	.	.	.																									.	.	.	.
Template Conservation																													.	.	.	.	.
Template Sequence		L	P	K	R	F	T	A	Q	G	L	P	D	L	N	H	S	Q	V	Y	A	V	K	T	V	L	Q	R	.	.	.	.	.	P	L	S	L	I	Q	G	P	P	G	T	G	K	T	V	T	S	A	T	I	V	Y	H	L	A	R	Q	G	N	G	P	V	L	V	C	A	P	S	N	I	A	V	D	Q	L	T	E	K
Template Known Secondary structure				S			S		T	T	S																T	S	.	.	.	.	.	S								T	T	S															T	T		S	S							S	S
Template Predicted Secondary structure																													.	.	.	.	.
Template SS confidence
		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.						.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.																				.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	E	F	F	P	E	N	A	V	E	Y	F	V	S	Y	Y	D	Y	Y	Q	P	E	A	Y	V	P	S	S	D	T	F	I	E	K	D	A	S	V	N	E	H	I	E	Q	M	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	A	T	K	A	M	L	E	R	R	D	V	V
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.
Template Sequence		I	H	Q	.	T	G	L	K	V	V	R	L	C	A	K	S	R	E	A	I	D	S	P	V	S	F	L	A	L	H	N	Q	I	R	N	M	D	S	M	P	E	L	Q	K	L	Q	Q	L	K	D	E	T	G	E	L	S	S	A	D	E	K	R	Y	R	A	L	K	R	T	A	E	R	E	L	L	M	N	A	D	V
Template Known Secondary structure				T	.	T	T									G	G	G	G	G				T	T	G	G	G	B							T		T	T												T	T	T	S																										S
Template Predicted Secondary structure					.
Template SS confidence
		534	.	.		.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	A	S	V	S	A	I	Y	G	L	G	D	P	D	L	Y	L	K	M	M	L	H	L	T	V	G	M	I	I
Query Conservation
Alig confidence													.	.	.	.
Template Conservation													.	.	.	.
Template Sequence		I	C	C	T	C	V	G	A	G	D	P	.	.	.	.	R	L	A	K	M	Q	F	R	S	I	L	I	D	E	S
Template Known Secondary structure						T	G	G	G	G		T	.	.	.	.	T	T	T	T				S					T	T	G
Template Predicted Secondary structure													.	.	.	.
Template SS confidence
		613	.	.	.	.	.	.	620	.	.	.					.	.	.	.	.	.	630	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions