Job Description P0A8F8 Confidence 98.78% Date Thu Jan 5 11:07:44 GMT 2012 Rank 137 Aligned Residues 137 % Identity 14% Template c2vsfA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:dna repair helicase rad3 related protein; PDBTitle: structure of xpd from thermoplasma acidophilum Resolution 2.9 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.					.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80			.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																									.	.	.	.																									.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.																									.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	Q	T	L	L	G	V	T	G	S	G	K	T	F	T	I	A	N	V	I	A	D	L	.	.	.	.	Q	R	P	T	M	V	L	A	P	N	K	T	L	A	A	Q	L	Y	G	E	M	K	E	F	.	.	F	P	E	N	A	V	E	Y	F	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																									.	.	.	.																									.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.																									.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	V	A	L	E	S	P	T	G	S	G	K	T	I	M	A	L	K	S	A	L	Q	Y	S	S	E	R	K	L	K	V	L	Y	L	V	R	T	N	S	Q	E	E	Q	V	I	K	E	L	R	S	L	S	S	T	M	K	I	R	A	I	P	M	Q	G	R	V	N	M	C	I	L	Y	R	M	V	D	D	L	H	E
Template Known Secondary structure									S	S	S	S	T	T						T	T		S	S	T	T	T	T	S								S	S																T	T	S															S	T								S	S
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
																																92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	Y	D	Y	Y	Q	P	E	A	Y	V	P	S	S	D	T	F	I	E	K	D	A	S	V	N	E	H	I	E	Q	M	R	L	S	A	T	K	A	M	L	E	R	R	D	V	V	V	V	A	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.
Template Conservation																																																																										.
Template Sequence		I	N	A	E	S	L	A	K	F	C	N	M	K	K	R	E	V	M	A	G	N	E	A	A	C	P	Y	F	N	F	K	I	R	S	D	E	T	K	R	F	L	F	D	E	L	P	T	A	E	E	F	Y	D	Y	G	E	R	N	N	V	C	P	Y	E	S	M	K	A	A	L	P	D	.	A	D	I	V	I	A	P
Template Known Secondary structure																					T		G	G	G	S	T	T		S	G	G	G	G											T															T											G	G	G	.		S
Template Predicted Secondary structure																																																																										.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.						.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																		.	.	.	.	.
Query SS confidence																		.	.	.	.	.
Query Sequence		V	S	A	I	Y	G	L	G	D	P	D	L	Y	L	K	M	.	.	.	.	.	M	L	H	L	T	V	G	M	I	I	D	Q	R	A
Query Conservation																		.	.	.	.	.
Alig confidence																		.	.	.	.	.
Template Conservation
Template Sequence		Y	A	Y	F	L	N	R	S	V	A	E	K	F	L	S	H	W	G	V	S	R	N	Q	I	V	I	I	L	D	E	A	H	N	L	P
Template Known Secondary structure						T	S															S	T	T						T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions