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Job DescriptionP0A8F8
Confidence99.91%DateThu Jan 5 11:07:44 GMT 2012
Rank47Aligned Residues345
% Identity25%Templatec2i4iA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:atp-dependent rna helicase ddx3x; PDBTitle: crystal structure of human dead-box rna helicase ddx3x
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   12.......20.........30.........40.........50...... ...60.......
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Query Sequence  KPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADL. . . . . . . . . . . . . . . . . . . . . . . . QRPTMVLAPNK
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Template Sequence  RPTPVQKHAIPIIKEK. . . . . RDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTR
Template Known Secondary structure  S

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TTS




BTTBS
SB

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   202.......210....... ..220.........230.........240.........250.........260.........270......
 
   68.70.........80.........90.........100.........110.........120.........130.........140.......
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Query Sequence  TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYG
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Template Sequence  ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQ. . . . . . . . . . . . . . . . . . . . . . . . . . . IRDLERGCHLLVATPGRLVD
Template Known Secondary structure  TTSS


SSS
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S
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   277..280.........290.........300......... 310.........320.........
 
   148.150.........160.........170.........180.........190.........200.........210.........220.......
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Query Sequence  LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLF
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Template Sequence  MMERGKIGLDFCKYLVLDEAD. . . . . RMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLA
Template Known Secondary structure  TTSB

TT

SS.....TT
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   330.........340.........350 .........360.........370.........380.........390.........400....
 
   228.230.........240.........250.........260.........270.........280.........290.........300.......
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Query Sequence  DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE
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Template Sequence  VGTSENITQKV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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SS.....................................................................
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   405....410.....
 
   308.310.........320.........330.........340.........350.........360.........370.........380.......
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Query Sequence  NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   388.390.........400.........410.........420.........430.........440.........450.........460.......
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Query Sequence  QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE
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Template Conservation  .....................................                                           
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLY
Template Known Secondary structure  .....................................

GGGT

TT

SS
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   420.........430.........440.........450.........460..
 
   468.470.........480.........490.........500.........510.........520.........530.........540.......
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Query Sequence  EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN
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Template Sequence  HEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPS. . . . . DIEEYVHRIGRTGR. NL
Template Known Secondary structure  TT


TTS
TSS

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S.....STTB

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   463......470.........480.........490.........500.........510.........520 .........530.... ..
 
   548.550.........560.........570.........580.....
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Query Sequence  GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT
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Template Conservation 
                
   
      
   
     
Template Sequence  GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAY
Template Known Secondary structure 
GGGGGGTT



T
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   539540.........550.........560.........570......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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