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Job DescriptionP0A8F8
Confidence99.85%DateThu Jan 5 11:07:44 GMT 2012
Rank63Aligned Residues264
% Identity15%Templatec2f55C_
PDB info PDB header:hydrolase/dnaChain: C: PDB Molecule:polyprotein; PDBTitle: two hepatitis c virus ns3 helicase domains complexed with2 the same strand of dna
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.........70.........80.........90.........100.........
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Query Sequence  DGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFI
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Template Sequence  QTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRTI. . . . . . . . . . . . . . .
Template Known Secondary structure  SS
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SSSSTTTTSTTS

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   195....200.........210.........220.........230.........240.........250.........
 
   110.........120.........130.........140.........150.........160.........170.........180.........
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Query Sequence  EKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . TTGGSITYSTYGKFLAD. . . GGCSGGAYDIIICDECH. . . . . . STDSTTILGIGTVLD
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S

T...TSSSTT

STTTT......

STT
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   260.........270...... ...280.........290... ......300........
 
   190.........200.........210.........220.........230.........240.........250.........260.........
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Query Sequence  RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA
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Template Sequence  QAETAGARLVVLATATPPGSVT. . . . . . . VPHPNIEEIGLSNNGEIPFYGKAIPIEAIK. . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  SSTTTT


SS
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   309310.........320.........330 .........340.........350.........360
 
   270.........280.........290.........300.........310.........320.........330.........340.........
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Query Sequence  RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG
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   350.........360.........370.........380.........390.........400.........410.........420.........
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Query Sequence  MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA
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   430.........440.........450.........460.........470.........480.........490.........500.........
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Query Sequence  TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG
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Template Sequence  . . . . . . . . . . . . . . . . GGRHLIFCHSKKKCDELAAKLTGLGLNAVAYYRGLDVSVI. . . . . . . PPIGDVVVVATDALFTG
Template Known Secondary structure  ................TSB
SSTT




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SSS
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SSSSB


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   361........370.........380.........390.........400 .........410.......
 
   510.........520.........530.........540.........550.....
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Query Sequence  . . . . . . . . . . . . . . . . . LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGD
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Template Sequence  DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQ. . . . . DAVSRSQRRGRTGRGRSGIYRFVTP
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B


SSS
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.....BTTTS
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   421........430.........440.........450... ......460.........470........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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