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Job DescriptionP0A8F8
Confidence100.00%DateThu Jan 5 11:07:44 GMT 2012
Rank1Aligned Residues621
% Identity62%Templatec2d7dA_
PDB info PDB header:hydrolase/dnaChain: A: PDB Molecule:uvrabc system protein b; PDBTitle: structural insights into the cryptic dna dependent atp-ase2 activity of uvrb
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFP
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Template Conservation            
   
  

  
            
   

 


  
   
       


 
   
  

  

     
Template Sequence  DRFELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEFFP
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S



TTTT
S
TTS




SS
T
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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
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Query Sequence  ENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLT
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Template Conservation     
                                                  


 
   
               
 
Template Sequence  NNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLR
Template Known Secondary structure  TS




TTTT



S

GGGGS
B


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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   163......170.........180.........190.........200.........210.........220.........230.........240..
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Query Sequence  VGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT
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Template Conservation    
                                                                             
Template Sequence  TEMEIERNELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFPASRDEHCVRVEFFGDEIERIREVDALTGEILGDRDHVA
Template Known Secondary structure  TT
B

TT

SSS

TTTT
TT
SSSSSBTTT


S
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   163......170.........180.........190.........200.........210.........220.........230.........240..
 
   243......250.........260.........270.........280.........290.........300.........310.........320..
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Query Sequence  IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP
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Template Conservation                                                                                  
Template Sequence  IFPASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPPGSTP
Template Known Secondary structure 

SSSS


TT
S

TTGGGGTT

TT


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   243......250.........260.........270.........280.........290.........300.........310.........320..
 
   323......330.........340.........350.........360.........370.........380.........390.........400..
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Query Sequence  PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELE
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Template Conservation                                                                                  
Template Sequence  YTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIE
Template Known Secondary structure  B
GGGGS
SS
TTTSS
GGGGGS



T
S
SS

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   323......330.........340.........350.........360.........370.........380.........390.........400..
 
   403......410.........420.........430.........440.........450.........460.........470.........480..
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Query Sequence  KSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT
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Template Conservation         .                    
   
   
                                           
Template Sequence  HTDEMVE. QIIRPTGLLDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKT
Template Known Secondary structure 
SS
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TT





STTTTT

SSTT


TT

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   403...... 410.........420.........430.........440.........450.........460.........470.........480.
 
   483......490.........500.........510.........520.........530.........540.........550.........560..
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Query Sequence  VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA
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Template Conservation    
      
  
   




    




     

  
        
     
  

  
 
                
Template Sequence  LERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITKSME
Template Known Secondary structure  TS
SS


STT


TTTTTT

TTTTSTTTTSTT

SS

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   482.......490.........500.........510.........520.........530.........540.........550.........560.
 
   563......570.........580.........590.........600.........610.........620.........630.........640..
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Query Sequence  KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL
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Template Conservation                            ......................................                
Template Sequence  IAINETKRRREQQERFNEEHGITPKT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . INKKERQKVVEQMEHE
Template Known Secondary structure  T




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   562.......570.........580....... ..590.........600...
 
   643......650.........660..
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Query Sequence  MMQHAQNLEFEEAAQIRDQL
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Template Conservation    
    
  
 

   
  
Template Sequence  MKEAAKALDFERAAELRDLL
Template Known Secondary structure  TT

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   635....640.........650....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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