Job Description P0A8F8 Confidence 99.92% Date Thu Jan 5 11:07:44 GMT 2012 Rank 45 Aligned Residues 434 % Identity 18% Template c1tf2A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of seca:adp in an open conformation from2 bacillus subtilis Resolution 2.90 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.				.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.				.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																																.	.	.																	.	.	.
Query SS confidence																																																.	.	.																	.	.	.
Query Sequence		F	K	P	S	G	D	Q	P	E	A	I	R	R	L	E	E	G	L	E	D	G	L	A	H	Q	T	L	L	G	V	T	G	S	G	K	T	F	T	I	A	N	V	I	A	D	L	.	.	.	Q	R	P	T	M	V	L	A	P	N	K	T	L	A	A	Q	.	.	.	L	Y	G	E	M	K	E	F	F	P	E	N
Query Conservation																																																.	.	.																	.	.	.
Alig confidence																			.	.	.	.	.		.	.																						.	.	.																	.	.	.
Template Conservation																			.	.	.	.	.		.	.
Template Sequence		M	F	P	F	K	V	Q	L	M	G	G	V	A	L	H	D	G	.	.	.	.	.	N	.	.	I	A	E	M	K	T	G	E	G	K	T	L	T	S	T	L	P	V	Y	L	N	A	L	T	G	K	G	V	H	V	V	T	V	N	E	Y	L	A	S	R	D	A	E	Q	M	G	K	I	F	E	F	L	G	L	T
Template Known Secondary structure																	T	T	.	.	.	.	.	S	.	.						T	T	S															T	T	S	S							S	S																		T	T
Template Predicted Secondary structure																			.	.	.	.	.		.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.						.			.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.								.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.
Query Sequence		A	V	E	Y	F	V	S	Y	Y	D	Y	Y	Q	P	E	A	Y	V	P	S	S	D	T	F	I	E	K	D	A	S	V	N	E	H	I	E	Q	M	R	L	S	A	T	K	A	M	L	E	R	R	D	V	V	V	V	A	S	V	S	A	I	.	.	.	.	.	.	.	Y	G	L	G	D	P	D	L	Y	L	K	M
Query Conservation																																																															.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	G	L	N	L	N	S	M	S	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	R	E	A	Y	A	A	D	I	T	Y	S	T	N	N	E	L	G	F	D	Y	L	R	D	N	M	V	L	Y	K	E	Q	M	V	Q	R
Template Known Secondary structure							T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	S	S																	T	T		S	S	G	G	G
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.																																	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	H	L	T	V	G	M	I	I	D	Q	R	A	I	L	R	R	L	A	E	L	Q	Y	A	R	N	D	Q	A	F	Q	R	G	T	F	R	V	R	G	E	V	I	D	I	F	P	A	E	S	D	D	I	A	L	R	V	E	L	F	D	E	E	V	E	R	L	S	L	F	D	P	L	T	G	Q	I	V	S	T
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	L	H	F	A	V	I	D	E	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I	L	I	D	E	A	R	T	P	L	I	I	S	G	Q	A	A	K	S	T	K	L	Y	V	Q	A	N	A	F	V	R	T	L	K	A	E	K	D	Y	T	Y	D	I	K	T	K	A	V	Q
Template Known Secondary structure										T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	S	T	T								S	S															T	T			S	S	S	S					S	S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210																				.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	R	F	T	I	Y	P	K	T	H	Y	V	T	P	R	E	R	I	V	Q	A	M	E	E	I	K	E	E	L	A	A	R	R	K	V	L	L	E	N	N	K	L	L	E	E	Q	R	L	T	Q	R	T	Q	F	D	L	E	M	M	N	E	L	G	Y	C	S	G	I	E	N	Y	S	R	F	L	S	G	R	G
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	E	E	G	M	T	K	A	E	K	A	F	G	I	D	N	L	F	D	V	K	H	V	A	L	N	H	H	I	N	Q	A	L	K	A	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														T	T		S		S	S	S	G	G	G															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	E	P	P	P	T	L	F	D	Y	L	P	A	D	G	L	L	V	V	D	E	S	H	V	T	I	P	Q	I	G	G	M	Y	R	G	D	R	A	R	K	E	T	L	V	E	Y	G	F	R	L	P	S	A	L	D	N	R	P	L	K	F	E	E	F	E	A	L	A	P	Q	T	I	Y	V	S	A	T	P	G
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	V	A	M	Q	K	D	V	D	Y	V	V	E	D	G	Q	V	V	I	V	D	S	F	T	G	R	L	M	K	G	R	R	Y	S	E	G	L	H	Q	A	I	E	A	K	E	G	L	E	I	Q	N	E	S	M	T	L	A	T	I	T	F	Q	N	Y	F	R	M	Y	E	K	L	A	G	M	T	G	T	A	K
Template Known Secondary structure		.	.		T			B	T	T	T					T	T					B		T	T	T			B		T	T				T	T	T									T	T																				T	T	S	S							S			G
Template Predicted Secondary structure		.	.
Template SS confidence
				298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.						.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
Predicted Secondary structure																					.	.	.	.	.
Query SS confidence																					.	.	.	.	.
Query Sequence		N	Y	E	L	E	K	S	G	G	D	V	V	D	Q	V	V	R	P	T	.	.	.	.	.	G	L	L	D	P	I	I	E	V	R	P	V	A	T	Q	V	D	D	L	L	S	E	I	R	Q	R	A	A	I	N	E	R	V	L	V	T	T	L	T	K	R	M	A	E	D	L	T	E	Y	L	E	E	H	G	E	R
Query Conservation																					.	.	.	.	.
Alig confidence																					.	.	.	.	.
Template Conservation
Template Sequence		T	E	E	E	E	F	R	N	I	Y	N	M	Q	V	V	T	I	P	T	N	R	P	V	V	R	D	D	R	P	D	L	I	Y	R	T	M	E	G	K	F	K	A	V	A	E	D	V	A	Q	R	Y	M	T	G	Q	P	V	L	V	G	T	V	A	V	E	T	S	E	L	I	S	K	L	L	K	N	K	G	I	P
Template Known Secondary structure		G	G																		S	S													S	S																			T								S	S													T	T	T
Template Predicted Secondary structure
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.				.	.	.	.						.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure																																										.	.	.					.	.	.	.	.
Query SS confidence																																										.	.	.					.	.	.	.	.
Query Sequence		V	R	Y	L	H	S	D	I	D	T	V	E	R	M	E	I	I	R	D	L	R	L	G	E	F	D	V	L	V	G	I	N	L	L	R	E	G	L	D	M	.	.	.	P	E	V	S	.	.	.	.	.	L	V	A	I	L	D	A	D	K	E	G	F	L	R	S	E	R	S	L	I	Q	T	I	G	R	A	A	R
Query Conservation																																										.	.	.					.	.	.	.	.
Alig confidence																									.	.																.	.	.					.	.	.	.	.										.	.	.	.	.
Template Conservation																									.	.																																					.	.	.	.	.
Template Sequence		H	Q	V	L	N	A	K	N	H	E	R	E	A	Q	I	I	E	E	A	G	Q	K	G	.	.	A	V	T	I	A	T	N	M	A	G	R	G	T	D	I	K	L	G	E	G	V	K	E	L	G	G	L	A	V	V	G	T	E	R	H	E	.	.	.	.	.	S	R	R	I	D	N	Q	L	R	G	R	S	G	R
Template Known Secondary structure							S	S	S										T	S	S	S	T	T	.	.							T	T	S	S	T	T							T	T		G	G	G	T	S						S	S			S	.	.	.	.	.	S									T	T	S	S
Template Predicted Secondary structure																									.	.																																					.	.	.	.	.
Template SS confidence
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.			.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.						.	.	.	.	.	520	.	.	.	.	.	.	.	.
		545	.	.	.	.	550	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	N	G	K	A	I	L	Y	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	G	D	P	G	I	T	Q	F	Y
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		529	530	.	.	.	.	.	.	.	.