Return to main results Retrieve Phyre Job Id

Job DescriptionP0A8F8
Confidence100.00%DateThu Jan 5 11:07:44 GMT 2012
Rank3Aligned Residues500
% Identity61%Templatec1c4oA_
PDB info PDB header:replicationChain: A: PDB Molecule:dna nucleotide excision repair enzyme uvrb; PDBTitle: crystal structure of the dna nucleotide excision repair enzyme uvrb2 from thermus thermophilus
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60.........70.........80....
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Query Sequence  FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPEN
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Template Conservation        . 
   
  

  
           

   





      
       


 

  
  
            
Template Sequence  FRYRGP. SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRELFPEN
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S
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TTTT
S
TTS
T

SS
TTS
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   3..... .10.........20.........30.........40.........50.........60.........70.........80.
 
   85....90.........100.........110.........120.........130.........140.........150...... ...160...
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Query Sequence  AVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLK. MMLHLTV
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Template Sequence  AVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLTRRDVIVVASVSAIYGLGDPREYRARNLVGFVL
Template Known Secondary structure 


GGGTS


GGGT



S


S
GGG
S





B



B
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   82.......90.........100.........110.........120.........130.........140.........150.........160.
 
   164.....170.........180.........190.........200.........210.........220.........230.........240...
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Query Sequence  GMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI
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Template Sequence  FPATHY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 

S
S
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   240.....
 
   244.....250.........260.........270.........280.........290.........300.........310.........320...
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Query Sequence  YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP
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Template Conservation  .......                                                                         
Template Sequence  . . . . . . . LSPEGLEEILKEIEKELWERVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYARYFTGKAPGEPPY
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SSTT
S

TTGGGGT

TTS


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   246...250.........260.........270.........280.........290.........300.........310........
 
   324.....330.........340.........350.........360.........370.........380.........390.........400...
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Query Sequence  TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK
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Template Conservation                                                                                  
Template Sequence  TLLDYFPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFELAH
Template Known Secondary structure 
GGGGS
TT
TTTSS
GGGGGSS


T
SSS

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   319320.........330.........340.........350.........360.........370.........380.........390........
 
   404.....410.........420.........430.........440.........450.........460.........470.........480...
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Query Sequence  SGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV
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Template Conservation       .                     
   
               

             
           
     
Template Sequence  SGRVV. EQIIRPTGLLDPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAF
Template Known Secondary structure 
S.
S
TT





STTTT

SSTT


TT

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   399400... ......410.........420.........430.........440.........450.........460.........470.......
 
   484.....490.........500.........510.........520.........530.........540.........550.........560...
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Query Sequence  ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK
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Template Sequence  KRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQR
Template Known Secondary structure  TTS
SS



TT


TTTTTTS
SGGGSGGGTTSTT

SS

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   478.480.........490.........500.........510.........520.........530.........540.........550.......
 
   564.....570.........580.......
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Query Sequence  AIGETERRREKQQKYNEEHGITPQ
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Template Conservation   
                      
Template Sequence  AIEETNRRRALQEAYNLEHGITPE
Template Known Secondary structure  T



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   558.560.........570.........580.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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