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Job DescriptionP0A8F8
Confidence99.89%DateThu Jan 5 11:07:44 GMT 2012
Rank57Aligned Residues270
% Identity19%Templatec1a1vA_
PDB info PDB header:hydrolase/dnaChain: A: PDB Molecule:protein (ns3 protein); PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.........70.........80.........90.........100.........
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Query Sequence  DGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFI
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Template Sequence  QSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTI. . . . . . . . . . . . . . .
Template Known Secondary structure  SS


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   195....200.........210.........220.........230.........240.........250.........
 
   110.........120.........130.........140.........150.........160.........170.........180.........
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Query Sequence  EKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . TTGSPITYSTYGKFLA. . . . DGGSGGAYDIIICDECH. . . . . . STDATSILGIGTVLD
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   260.........270..... ....280.........290.. .......300.......
 
   190.........200.........210.........220.........230.........240.........250.........260.........
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Query Sequence  RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA
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Template Sequence  QAETAGARLVVLATATPPGSVTVPHPNIEEVALSTTGEIPFYGKAIP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTTTT
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   309310.........320.........330.........340.........350.....
 
   270.........280.........290.........300.........310.........320.........330.........340.........
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Query Sequence  RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   350.........360.........370.........380.........390.........400.........410.........420.........
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Query Sequence  MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA
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   430.........440.........450.........460.........470.........480.........490.. .......500..
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Query Sequence  TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL. . . . . . . RLGEFDVLVG
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Template Sequence  . . . . . . . . . . . LEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALFTGDFDSVID
Template Known Secondary structure  ...........TSS
SSTT


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   356...360.........370.........380.........390.........400.........410.........420....
 
   503......510 .........520.........530.........540.........550.....
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Query Sequence  INLLREGL. . DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGD
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Template Sequence  CNTVTQTVDFSLDPTFTIETTTLPQ. . . . . DAVSRTQRRGRTGRGKPGIYRFVAP
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SSS




.....BTTB
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   428.430.........440.........450.. .......460.........470.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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