Return to main results Retrieve Phyre Job Id

Job DescriptionP67662
Confidence99.87%DateThu Jan 5 12:10:46 GMT 2012
Rank11Aligned Residues92
% Identity20%Templated1b9ma1
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain N-terminal domain of molybdate-dependent transcriptional regulator ModE
Resolution1.75

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
Predicted Secondary structure 












Query SS confidence 















































































Query Sequence  RLKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRIYYQGCRRMLHEVQDVHEQ
Query Conservation   
  
  
  
   

 
 

  
 


 


  
  

  

  

 
      

  
  
   
   
         
Alig confidence 















































































Template Conservation      
  
 

   

   

  
  
   

  
  

  

  

 
   
  

  
  

  
  
          
Template Sequence  DPRRISLLKHIALSGSISQGAKDAGISYKSAWDAINEXNQLSEHILVERATGGAVLTRYGQRLIQLYDLLAQIQQKAFDV
Template Known Secondary structure 
SST

TS






Template Predicted Secondary structure 










Template SS confidence 















































































   18.20.........30.........40.........50.........60.........70.........80.........90.......
 
   83......90....
Predicted Secondary structure 





Query SS confidence 











Query Sequence  LYAFNNTPIGTL
Query Conservation              
Alig confidence 











Template Conservation 
         

Template Sequence  LSDDDALPLNSL
Template Known Secondary structure 

SS
TT
Template Predicted Secondary structure 





Template SS confidence 











   103......110....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions