 |
Job Description | P67662 | Confidence | 97.41% | Date | Thu Jan 5 12:10:46 GMT 2012 |
Rank | 72 | Aligned Residues | 73 |
% Identity | 27% | Template | c3fm5D_ |
PDB info |
PDB header:transcription regulator | Chain: D: PDB Molecule:transcriptional regulator; |
PDBTitle: x-ray crystal structure of transcriptional regulator (marr family)2 from rhodococcus sp. rha1
|
Resolution | 2.00 Å |
|
 |
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | |
|
|
. | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | |
|
|
|
|
. | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . |
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
| . | . | . | . | . |
|
|
|  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | L | K | R | M | S | V | F | A | K | V | V | E | F | G | . |
. |
. |
S | F | T | A | A | A | R | Q | L | Q | M | S | V | S | S | I | S | Q | T | V | S | K | L | E | D | E | L | Q | V | K | L | L | N | R | S | . |
. |
. |
. |
. |
T | R | S | I | G | L | T | E | A | G | R | I | Y | Y | Q | G | C | R | R | M | L | H |
Query Conservation |   |
  |
|   |   |
|   |   |
|   |   |
|   |   |   |
| . | . | . |
|   |
|   |
|
|   |   |
|   |
|
|
|   |
|
|
|   |   |
|   |   |
|
|   |   |
|
|   |   |
|
|   |
|   | . | . | . | . | . |   |   |   |   |   |
|
|   |   |
|   |   |
|   |   |   |
|   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |
|
|
|   |   |
|   |   |
|   |   | . | . | . |   |
|   |
|   |
|   |   |   |   |   |
|   |
|   |
|   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
R | V | R | S | Y | S | V | L | V | L | A | C | E | Q | A | E | G | V | N | Q | R | G | V | A | A | T | X | G | L | D | P | S | Q | I | V | G | L | V | D | E | L | E | E | . |
. |
. |
R | G | L | V | V | R | T | L | D | P | S | D | N | K | L | I | A | A | T | E | E | G | R | R | L | R | D | D | A | K | A | R | V | D |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  | T | S | S | S |
|  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | T | T | S |  |  |  |  |  |
| T | T |
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
36 | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | |
|
|
. | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . |
  |
  |   |
75 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
Query SS confidence |   |
|
|
|
|
Query Sequence |   |
E | V | Q | D |
Query Conservation |   |
  |   |   |   |
Alig confidence |   |
|
|
|
|
Template Conservation |   |
  |   |   |   |
Template Sequence |   |
A | A | H | G |
Template Known Secondary structure |   |
 |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
Template SS confidence |   |
|
|
|
|
  |   |
115 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|