Job Description P67662 Confidence 99.82% Date Thu Jan 5 12:10:46 GMT 2012 Rank 13 Aligned Residues 197 % Identity 16% Template c2hxrA_ PDB info PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional regulator cynr; PDBTitle: structure of the ligand binding domain of e. coli cynr, a2 transcriptional regulator controlling cyanate metabolism Resolution 2.05 Å

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		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.				.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.
Query SS confidence																																											.	.	.
Query Sequence		T	L	R	I	G	C	S	S	T	M	A	Q	N	V	L	A	G	L	T	A	K	M	L	K	E	Y	P	G	L	S	V	N	L	V	T	G	I	P	A	P	D	.	.	.	L	I	A	D	G	L	D	V	V	I	R	V	G	A	L	Q	D	S	S	L	F	S	R	R	L	G	A	M	P	M	V	V	C	A	A	K
Query Conservation																																											.	.	.
Alig confidence																																											.	.	.
Template Conservation
Template Sequence		S	L	R	I	A	V	T	P	T	F	T	S	Y	F	I	G	P	L	X	A	D	F	Y	A	R	Y	P	S	I	T	L	Q	L	Q	E	X	S	Q	E	K	I	E	D	X	L	C	R	D	E	L	D	V	G	I	A	F	A	P	V	H	S	P	E	L	E	A	I	P	L	L	T	E	S	L	A	L	V	V	A	Q
Template Known Secondary structure													T	T	T													T	T	S																		T	T	S		S						S	S				T	T																	T
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	L	T	Q	Y	G	I	P	E	K	P	A	D	L	S	S	H	S	W	L	E	Y	S	V	R	P	D	N	E	F	E	L	I	A	P	E	G	I	S	T	R	L	I	P	Q	G	R	F	V	T	N	D	P	M	T	L	V	R	W	L	T	A	G	A	G	I	A	Y	V	P	L	M	W	V	I	N	E	I	N
Query Conservation
Alig confidence																									.																																																							.	.
Template Conservation																									.																																																							.	.
Template Sequence		H	H	P	L	A	V	H	E	Q	V	A	L	S	R	L	H	D	E	K	L	V	L	L	.	S	A	E	F	A	T	R	E	Q	I	D	H	Y	C	E	K	A	G	L	H	P	Q	V	V	I	E	A	N	S	I	S	A	V	L	E	L	I	R	R	T	S	L	S	T	L	L	P	A	A	I	A	T	Q	H	.	.
Template Known Secondary structure		T	S	G	G	G	G		S				G	G	G	G	G	G							.		T	T	S													T	T										S												S	S		B					T							.	.
Template Predicted Secondary structure																									.																																																							.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	E	L	E	I	L	L	P	R	Y	Q	S	D	P	R	P	V	Y	A	L	Y	T	E	K	D	K	L	P	L	K	V	Q	V	V	I	N	S	L	T	D	Y	F	V
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	D	G	L	K	A	I	S	L	A	P	P	L	L	E	R	T	A	V	L	L	R	R	K	N	S	W	Q	T	A	A	A	K	A	F	L	H	X	A	L	D	K	C	A
Template Known Secondary structure		.	T	T							S	S		S											T	T	S
Template Predicted Secondary structure		.
Template SS confidence
			249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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