Job Description P75777 Confidence 99.94% Date Wed Jan 25 15:21:02 GMT 2012 Rank 2 Aligned Residues 226 % Identity 27% Template c2f1mA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:acriflavine resistance protein a; PDBTitle: conformational flexibility in the multidrug efflux system protein acra Resolution 2.71 Å

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		33	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		G	L	T	L	Y	G	N	V	D	I	.	R	T	V	N	L	S	F	R	V	G	G	R	V	E	S	L	A	V	D	E	G	D	A	I	K	A	G	Q	V	L	G	E	L	D	H	K	P	Y	E	I	A	L	M	Q	A	K	A	G	V	S	V	A	Q	A	Q	Y	D	L	M	L	A	G	Y	R	N	E	E	I	A
Query Conservation												.
Alig confidence												.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	T	E	L	P	G	R	T	S	A	Y	R	I	A	E	V	R	P	Q	V	S	G	I	I	L	K	R	N	F	K	E	G	S	D	I	E	A	G	V	S	L	Y	Q	I	D	P	A	T	Y	Q	A	T	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D
Template Known Secondary structure												S								S	S									S		T	T					T	T	S		S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.																											.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	A	A	A	V	K	Q	A	Q	A	A	Y	D	Y	A	Q	N	F	Y	N	R	Q	Q	G	L	W	K	S	R	T	I	S	A	N	D	L	E	N	A	R	S	S	R	D	Q	A	Q	A	T	L	K	S	A	Q	D	K	L	R	Q	Y	R	S	G	N	R	E	Q	D	I	A	Q	A	K	A	S	L	E	Q	A
Query Conservation
Alig confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	A	K	G	D	L	A	K	A	Q	A	A	A	N	I	A	Q	L	T	V	N	R	Y	Q	K	L	L	G	T	Q	Y	I	S	K	Q	E	Y	D	Q	A	L	A	D	A	Q	Q	A	N	A	A	V	T	A	A	K	A	A	V	E	T	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																										T	T	T	T	S	T	T																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.			.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.
Query SS confidence																																										.	.
Query Sequence		Q	A	Q	L	A	Q	A	E	L	N	L	Q	D	S	T	L	I	A	P	S	D	G	T	L	L	T	R	A	V	E	P	G	T	V	L	N	E	G	G	T	.	.	V	F	T	V	S	L	T	R	P	V	W	V	R	A	Y	V	D	E	R	N	L	D	Q	A	Q	P	G	R	K	V	L	L	Y	T	D	G	R	P
Query Conservation																																										.	.
Alig confidence		.	.	.	.	.	.	.	.																																	.	.																					.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																																																							.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	I	N	L	A	Y	T	K	V	T	S	P	I	S	G	R	I	G	K	S	N	V	T	E	G	A	L	V	Q	N	G	Q	A	T	A	L	A	T	V	Q	Q	L	D	P	I	Y	V	D	V	T	Q	S	S	N	D	.	.	.	.	.	X	K	A	K	V	S	L	I	T	S	D	G	I
Template Known Secondary structure		.	.	.	.	.	.	.	.					T	T					S	S								S	S		T	T					T	T		S	S		S							S	S									T	T	T	.	.	.	.	.										S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																																							.	.	.	.	.
Template SS confidence
										169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.						.	.	.	.	.	.	.	230	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	P	Y	H	G	Q	I	G	F	V	S	P	T	A	E	F	T	P	K	T	V	E	T	P	D	L	R	T	D	L	V	Y	R	L	R	I	V	V	T	D	A	D	D	A	L	R	Q	G	M	P	V	T	V	Q	F	G
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	F	P	Q	D	G	T	L	E	F	S	D	V	T	V	D	Q	T	T	G	S	.	.	.	.	.	.	.	.	.	.	.	I	T	L	R	A	I	F	P	N	P	D	H	T	X	X	P	G	X	F	V	R	A	R	L	E
Template Known Secondary structure		B		S	S		B			S	S	S						S	S	S			.	.	.	.	.	.	.	.	.	.	.										T	T					S	S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.												.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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