Phyre 2 alignment of P75989 with c3oioA

Job Description P75989
Confidence 41.87% Date Thu Jan 5 12:16:59 GMT 2012

Rank 391 Aligned Residues 59

% Identity 14% Template c3oioA_

PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (arac-type dna-binding domain- PDBTitle: crystal structure of transcriptional regulator (arac-type dna-binding2 domain-containing proteins) from chromobacterium violaceum

Resolution 1.65 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence	Y	S	I	G	D	V	A	E	R	C	G	I	N	P	V	T	L	R	A	W	Q	R	R	Y	G	L	L	K	P	Q	R	S	E	G	G	H	R	L	F	D	E	E	D	I	Q	R	I	E	.	E	I	K	R	W	I	S	N	G	V	P	V	G	K	V	K	A	L	L	E
Query Conservation																																																	.
Alig confidence																								.	.	.	.	.	.	.	.	.																	.
Template Conservation																								.	.	.	.	.	.	.	.	.
Template Sequence	L	S	T	D	D	I	A	Y	Y	V	G	V	S	R	R	Q	L	E	R	L	F	K	Q	.	.	.	.	.	.	.	.	.	Y	L	G	T	V	P	S	K	Y	Y	L	E	L	R	L	N	R	A	R	Q	L	L	Q	Q	T	S	K	S	I	V	Q	I	G	L	A	C	G
Template Known Secondary structure											T	S												.	.	.	.	.	.	.	.	.		T	S	S																																T	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.
Template SS confidence
	236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.										.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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