Job Description P07762 Confidence 98.29% Date Thu Jan 5 11:00:31 GMT 2012 Rank 126 Aligned Residues 211 % Identity 17% Template d1x1na1 SCOP info TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain Resolution 1.80

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		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.				300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.																	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.																	.	.	.	.	.	.	.	.	.
Query Sequence		V	H	L	G	S	W	R	R	H	T	D	N	N	F	W	L	S	Y	R	E	L	A	D	Q	L	V	P	Y	A	K	W	M	G	F	T	H	L	E	L	L	P	I	N	E	H	P	F	D	G	S	W	G	.	.	.	Y	Q	P	T	G	L	Y	A	P	T	R	R	F	G	T	R	.	.	.	.	.	.	.	.	.
Query Conservation																																																						.	.	.																	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.																																												.	.	.																	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.
Template Sequence		L	H	P	T	S	F	.	.	.	P	G	P	Y	G	I	G	D	L	G	P	Q	A	F	K	F	L	D	W	L	H	L	A	G	C	S	L	W	Q	V	L	P	L	V	P	P	G	K	R	G	N	E	D	G	S	P	Y	S	G	Q	D	A	N	C	G	N	T	L	L	I	S	L	E	E	L	V	D	D	G	L	L
Template Known Secondary structure				G	G	G	S	.	.	.			T	T	S	S			S	S														T										S		B			S	S	S		T	T		T	T	S	B	S		S	S	S			G	G	G	S									T	S	S
Template Predicted Secondary structure								.	.	.
Template SS confidence
		32	.	.	.	.	.				.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	M	E	E	L	P	E	P	L	P	T	D	R	V	N	Y	S	T	I	S	E	I	K	D	P	L	I	T	K	A	A	K	R	L	L	S	S	E	G	E	L	K	D	Q	L	E	N	F	R	R	D	P	N	I	S	S	W	L	E	D	A	A	Y	F	A	A	I	D	N	S	V	N	T	I	S	W	Y	D	W	P
Template Known Secondary structure			G	G	G	S							S	B			T	T	T																					S																																			S	S	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
																																			316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.			.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.																		.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.																		.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	D	F	R	Y	F	I	D	A	A	H	A	A	G	L	N	V	I	L	D	W	V	P	.	.	G	H	F	P	T	D	D	F	A	L	A	E	F	D	G	T	N	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.																		.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.																		.	.	.	.	.
Template Conservation
Template Sequence		E	P	L	K	N	R	H	L	A	A	L	E	E	V	Y	Q	S	E	K	D	F	I	D	I	F	I	A	Q	Q	F	L	F	Q	R	Q	W	K	K	V	R	D	Y	A	R	S	K	G	I	S	I	M	G	D	M	P	I	Y	V	G	Y	H	S	A	D	V	W	A	N	K	K	Q	F	L	L	N	R	K	G	F	P
Template Known Secondary structure						T	T												S																												T	T									S	S			S	S	S					T		G	G	G	B		B		T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
					356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.			.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure		.	.	.																								.	.
Query SS confidence		.	.	.																								.	.
Query Sequence		.	.	.	L	Y	E	H	S	D	P	R	E	G	Y	H	Q	D	W	N	T	L	I	Y	N	Y	G	.	.	R	R	E	V	S	N	F	L	V	G	N	A	L	Y	W	I	E	R	F	G	I	D	A	L	R	V	D	A	V	A	S	M	I	Y	R	D	Y	S	R	K	E	G	E	W	I	P	N	E	F	G	G	R
Query Conservation		.	.	.																								.	.
Alig confidence		.	.	.																								.	.																		.	.									.	.
Template Conservation																																															.	.									.	.
Template Sequence		L	I	V	S	G	V	P	P	D	A	F	S	E	T	G	Q	L	W	G	S	P	L	Y	D	W	K	A	M	E	K	D	G	F	S	W	W	V	R	R	I	Q	R	A	T	D	.	.	L	F	D	E	F	R	I	D	.	.	H	F	R	G	F	A	G	F	W	A	V	P	S	E	E	K	I	A	I	L	G	R	W
Template Known Secondary structure		S					B			S	S	S	S	S			B					B		B								T	T	S													.	.			S						.	.	T	G	G	G	G	T							T	T		S	S	S	S	S
Template Predicted Secondary structure																																															.	.									.	.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.			.	.	.	.	.	.	320	.			.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	L	E	A	I	E	F	L	R	N	T	N	R	I	L	G	E	Q	V	S	G	A	V	T	M	A	E	E	S	T	D	F	P	G	V	S	R	P
Query Conservation
Alig confidence												.	.	.	.
Template Conservation												.	.	.	.
Template Sequence		K	V	G	P	G	K	P	L	F	D	.	.	.	.	A	I	L	Q	A	V	G	K	I	N	I	I	A	E	D	L	G	V	I	T	E	D	V	V	Q
Template Known Secondary structure												.	.	.	.																	S	S
Template Predicted Secondary structure												.	.	.	.
Template SS confidence
		345	.	.	.	.	350	.	.	.	.					.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions