Job Description P07762 Confidence 100.00% Date Thu Jan 5 11:00:31 GMT 2012 Rank 95 Aligned Residues 321 % Identity 18% Template d1ua7a2 SCOP info TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain Resolution 2.21

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		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.										.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.
Query Sequence		Q	F	D	A	P	I	S	I	Y	E	V	H	L	G	S	W	R	R	H	T	D	N	N	F	W	L	S	Y	R	E	L	A	D	Q	L	V	P	Y	A	K	W	M	G	F	T	H	L	E	L	L	P	I	N	E	H	P	F	D	G	.	.	.	.	.	.	.	.	.	S	W	G	Y	Q	P	T	G	L	Y	A	P
Query Conservation																																																													.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.			.	.	.	.	.	.	.	.											.																								.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.			.	.	.	.	.	.	.	.											.
Template Sequence		P	S	I	K	S	G	T	I	L	H	A	.	.	.	.	W	N	.	.	.	.	.	.	.	.	W	S	F	N	T	L	K	H	N	M	.	K	D	I	H	D	A	G	Y	T	A	I	Q	T	S	P	I	N	Q	V	K	E	G	N	Q	G	D	K	S	M	S	N	W	Y	W	L	Y	Q	P	T	S	Y	Q	I	G
Template Known Secondary structure				T	T	T	S						.	.	.	.	T	T	.	.	.	.	.	.	.	.	B								T		.						T	T		S													T	G	G	G			B	G	G	G	G	G	G	G	G
Template Predicted Secondary structure													.	.	.	.			.	.	.	.	.	.	.	.											.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.					.	.									.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350			.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370									.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.																					.	.	.	.	.	.	.	.
Query SS confidence																																												.	.																					.	.	.	.	.	.	.	.
Query Sequence		T	R	R	F	G	T	R	D	D	F	R	Y	F	I	D	A	A	H	A	A	G	L	N	V	I	L	D	W	V	P	G	H	F	P	T	D	D	F	A	L	A	E	.	.	F	D	G	T	N	L	Y	E	H	S	D	P	R	E	G	Y	H	Q	D	W	.	.	.	.	.	.	.	.	N	T	L	I	Y	N	Y	G
Query Conservation																																												.	.																					.	.	.	.	.	.	.	.
Alig confidence																																												.	.																					.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	R	Y	L	G	T	E	Q	E	F	K	E	M	C	A	A	A	E	E	Y	G	I	K	V	I	V	D	A	V	I	N	H	T	T	F	D	Y	A	A	I	S	N	E	V	K	S	I	P	N	W	T	H	G	N	T	Q	I	K	N	W	S	D	R	W	D	V	T	Q	N	S	L	L	G	L	Y	D	W	N	T	Q
Template Known Secondary structure			T	T	T															T	T	T										S	B			S		T	T	T	S						T	S	T	T							B				T	T								S	B	B	T	T	B					T	T
Template Predicted Secondary structure
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	E	V	S	N	F	L	V	G	N	A	L	Y	W	I	E	R	F	G	I	D	A	L	R	V	D	A	V	A	S	M	I	Y	R	D	Y	S	R	K	E	G	E	W	I	P	N	E	F	G	G	R	E	N	L	E	A	I	E	F	L	R	N	T	N	R	I	L	G	E	Q	V	S	G	A	V	T	M	A	E
Query Conservation
Alig confidence																		.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																		.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Sequence		N	T	Q	V	Q	S	Y	L	K	R	F	L	E	R	A	L	.	N	D	G	A	D	G	F	R	F	D	A	A	K	H	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	P	D	D	G	S	Y	G	S	Q	F	W	P	N	I	T	N	.	T	S	A	E	F	Q	Y	G	E
Template Known Secondary structure		S																.		T	T							T	T	G	G	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	S	G	G	G			S						T		.	S	S		S
Template Predicted Secondary structure																		.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.																					.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.
		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	T	D	F	P	G	V	S	R	P	Q	D	M	G	G	L	G	F	W	Y	K	W	N	L	G	W	M	H	D	T	L	D	Y	M	K	L	D	P	V	Y	R	Q	Y	H	H	D	K	L	T	F	G	I	L	Y	N	Y	T	E	N	F	V	L	P	L	S	H	D	E	V	V	H	G	K	K	S	I	L	D	R
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.
Template Sequence		I	L	Q	D	S	A	S	R	D	A	A	Y	A	N	Y	M	D	V	T	A	S	N	Y	G	H	S	I	R	S	A	L	K	N	R	N	L	G	.	.	.	.	.	.	.	V	S	N	I	S	H	Y	A	S	D	V	S	A	D	K	L	V	T	W	V	E	S	H	D	T	Y	A	N	D	D	E	E	S	T	W	M
Template Known Secondary structure					S	T	T								T	T	S																		T				.	.	.	.	.	.	.					S	S		S	S	S	S		G	G	G					S	S							S	T	T		S	S	T	T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.								.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.		560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		M	P	G	D	A	W	Q	K	F	A	N	L	R	A	Y	Y	G	W	M	W	A	.	F	P	G	K	K	L	L	F	M	G	N	E	F	A	Q	G	R	E	W	N	H	D	A	S	L	D	W	H	L	L	E	G	G	D	N	W	H	H	G	V	Q	R	L	V	R	D	L	N	L	T	Y	R	H
Query Conservation																							.
Alig confidence				.	.	.	.	.	.	.													.																																							.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.																																																				.	.	.	.	.
Template Sequence		S	D	.	.	.	.	.	.	.	D	D	I	R	L	G	W	A	V	I	A	S	R	S	G	S	T	P	L	F	F	S	R	P	E	G	G	G	N	G	V	R	F	P	G	K	S	Q	I	G	D	R	G	S	A	L	F	E	D	Q	A	.	.	.	.	.	I	T	A	V	N	R	F	H	N	V
Template Known Secondary structure				.	.	.	.	.	.	.												T	S	S	S	S									T	T		B	T	T	B	S			S	S		B	T	B	S				G	G	G	G				.	.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.	.																																																				.	.	.	.	.
Template SS confidence
		282	.								.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.						.	.	.	.	.	340	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions