Job Description P07762 Confidence 100.00% Date Thu Jan 5 11:00:31 GMT 2012 Rank 58 Aligned Residues 341 % Identity 19% Template d1j0ha3 SCOP info TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain Resolution 1.90

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		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.																				.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	R	K	K	A	N	Q	F	D	A	P	I	S	I	Y	E	V	H	L	G	S	W	R	R	H	T	D	N	N	F	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	Y	R	E	L	A	D	Q	L	V	P	Y	A	K	W	M	G	F	T	H	L	E	L	L	P	I	N	E	H
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation																								.																																						.
Template Sequence		D	L	F	E	A	P	D	W	V	K	D	T	V	W	Y	Q	I	F	P	E	R	F	.	A	N	G	N	P	S	I	S	P	E	G	S	R	P	W	G	S	E	D	P	T	P	T	S	F	F	G	G	D	L	Q	G	I	I	D	H	L	.	D	Y	L	V	D	L	G	I	T	G	I	Y	L	T	P	I	F	R	S
Template Known Secondary structure								G	G	G	G	G								G	G	G	T	.			S		G	G	G	S		T	T				T	T	S	S				S	S													T		.							T
Template Predicted Secondary structure																								.																																						.
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.																	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	F	D	G	S	W	G	Y	Q	P	T	G	L	Y	A	P	T	R	R	F	G	T	R	D	D	F	R	Y	F	I	D	A	A	H	A	A	G	L	N	V	I	L	D	W	V	P	G	H	F	P	T	D	D	F	A	L	A	E	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	T	N	L
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.
Template Sequence		P	S	N	.	.	H	K	Y	D	T	A	D	Y	F	E	V	D	P	H	F	G	D	K	E	T	L	K	T	L	I	D	R	C	H	E	K	G	I	R	V	M	L	D	A	V	F	N	H	C	G	Y	E	F	A	P	F	Q	D	V	W	K	N	G	E	S	S	K	Y	K	D	W	F	H	I	H	E	F	P	L	Q
Template Known Secondary structure		S	S	S	.	.	S			S		S							T	T	T																T	T										S	B			T	T											G	G	G		T	T	G	G	G	B		B	S	S	S	S
Template Predicted Secondary structure					.	.
Template SS confidence
		202	.	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	H	S	D	P	R	E	G	Y	H	Q	D	W	N	T	L	I	Y	N	Y	G	R	R	E	V	S	N	F	L	V	G	N	A	L	Y	W	I	E	R	F	G	I	D	A	L	R	V	D	A	V	A	S	M	I	Y	R	D	Y	S	R	K	E	G	E	W	I	P	N	E	F	G	G	R	E	N	L	E	A	I
Query Conservation
Alig confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	E	P	R	P	N	Y	D	T	F	A	F	V	P	Q	M	P	K	L	N	T	A	N	P	E	V	K	R	Y	L	L	D	V	A	T	Y	W	I	R	E	F	D	I	D	G	W	R	L	D	V	A	N	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	H
Template Known Secondary structure			S	S	S		S	B		B	S	T	T		T	T	S	B	B	B		T	T	S																										T	T	G	G	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.																									.	.
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		E	F	L	R	N	T	N	R	I	L	G	E	Q	V	S	G	A	V	T	M	A	E	E	S	T	D	F	P	G	V	S	R	P	Q	D	M	G	G	L	G	F	W	Y	K	W	N	L	G	W	M	H	D	T	L	D	Y	M	K	L	D	P	V	Y	R	Q	Y	H	H	D	K	L	T	F	G	I	L	Y	N	Y	.
Query Conservation																																																																																	.
Alig confidence																																				.	.	.	.	.																																									.
Template Conservation																																				.	.	.	.	.
Template Sequence		E	F	W	R	E	F	R	Q	E	V	K	A	L	K	P	D	V	Y	I	L	G	E	I	W	H	D	A	M	P	W	L	R	G	D	.	.	.	.	.	Q	F	D	A	V	M	N	Y	P	F	T	D	G	V	L	R	F	F	A	K	E	E	I	S	A	R	Q	F	A	N	Q	M	M	H	V	L	H	S	Y	P	N
Template Known Secondary structure																T	T								S	S			G	G	G		S	S	S	.	.	.	.	.	S		S			B													T	S			S															T	S
Template Predicted Secondary structure																																				.	.	.	.	.
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.						370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
					516	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.			580	.	.	.	.	.	.	.	.	.	590
Predicted Secondary structure		.	.	.																																																																	.	.
Query SS confidence		.	.	.																																																																	.	.
Query Sequence		.	.	.	T	E	N	F	V	L	P	L	S	H	D	E	V	V	H	G	K	K	S	I	L	D	R	M	P	G	D	A	W	Q	K	F	A	N	L	R	A	Y	Y	G	W	M	W	A	F	P	G	K	K	L	L	F	M	G	N	E	F	A	Q	G	R	E	W	N	.	.	H	D	A	S	L	D	W	H	L	L	E
Query Conservation		.	.	.																																																																	.	.
Alig confidence		.	.	.																								.	.	.	.	.	.	.	.	.																																	.	.									.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.																																											.	.	.
Template Sequence		N	V	N	E	A	A	F	N	L	L	G	S	H	D	T	S	R	I	L	T	V	C	G	G	D	I	.	.	.	.	.	.	.	.	.	R	K	V	K	L	L	F	L	F	Q	L	T	F	T	G	S	P	C	I	Y	Y	G	D	E	I	G	M	T	G	G	N	D	P	E	C	R	K	C	M	V	W	D	.	.	.
Template Known Secondary structure						T		B		B	S			T	T	S							T	T	T			.	.	.	.	.	.	.	.	.													S	S	S						T	T	G	G	G	T					S	T	T	G	G	G							.	.	.
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.																																											.	.	.
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.										.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
		591	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	D	N	W	H	H	G	V	Q	R	L	V	R	D	L	N	L	T	Y	R	H	H	K	A	M	H	E
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	P	M	Q	Q	N	K	E	L	H	Q	H	V	K	Q	L	I	A	L	R	K	Q	Y	R	S	L	R	R
Template Known Secondary structure		.	T	T	T	S
Template Predicted Secondary structure		.
Template SS confidence
			479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions