Phyre 2 alignment of P07762 with d1avaa2

Job Description P07762
Confidence 100.00% Date Thu Jan 5 11:00:31 GMT 2012

Rank 90 Aligned Residues 310

% Identity 17% Template d1avaa2

SCOP info TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain

Resolution 1.90

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence	E	V	H	L	G	S	W	R	R	H	T	D	N	N	F	W	L	S	Y	R	E	L	A	D	Q	L	V	P	Y	A	K	W	M	G	F	T	H	L	E	L	L	P	I	N	E	H	P	F	D	G	S	W	G	Y	Q	P	T	G	L	Y	A	P	T	R	.	R	F	G	T	R	D	D	F	R	Y	F	I	D	A	A
Query Conservation																																																																	.
Alig confidence																											.																					.	.																.
Template Conservation																											.																					.	.
Template Sequence	Q	V	L	F	Q	G	F	N	W	E	S	W	K	H	N	G	G	W	Y	N	F	L	M	G	K	V	.	D	D	I	A	A	A	G	I	T	H	V	W	L	P	P	A	S	Q	S	V	.	.	A	E	Q	G	Y	M	P	G	R	L	Y	D	L	D	A	S	K	Y	G	N	K	A	Q	L	K	S	L	I	G	A	L
Template Known Secondary structure									T	T	G	G	G		T	T								T	T		.							T										S		B	S	.	.	S	T	T	S	S	S	B			T	T			T	T		T	T
Template Predicted Secondary structure																											.																					.	.
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.

	326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.																							.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	H	A	A	G	L	N	V	I	L	D	W	V	P	G	H	F	P	T	D	D	F	A	L	A	E	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	T	N	L	Y	E	H	S	D	P	R	E	G	Y	H	Q	D	W	N	T	L	I	Y	N	Y	G	R	R	E	V	S
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	H	G	K	G	V	K	A	I	A	D	I	V	I	N	H	R	T	A	E	H	K	D	G	R	G	I	Y	C	I	F	E	G	G	T	P	D	A	R	L	D	W	G	P	H	M	I	C	R	D	D	R	P	Y	A	D	G	T	G	N	P	D	T	G	A	D	F	G	A	A	P	D	I	D	H	L	N	L	R	V	Q
Template Known Secondary structure				T										S	B				S				T	T	S								S	S	S	S	S	T	T				G	G	G	B		T	T		T	T	T			S		S				S	S				T	T	S		B	B		T	T	S
Template Predicted Secondary structure
Template SS confidence
	78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.

	384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	F	L	V	G	N	A	L	Y	W	I	E	R	F	G	I	D	A	L	R	V	D	A	V	A	S	M	I	Y	R	D	Y	S	R	K	E	G	E	W	I	P	N	E	F	G	G	R	E	N	L	E	A	I	E	F	L	R	N	T	N	R	I	L	G	E	Q	V	S	G	A	V	T	M	A	E	E	S	T	D	F
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	K	E	L	V	E	W	L	N	W	L	K	A	D	I	G	F	D	G	W	R	F	D	F	A	K	G	Y	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	A	K	I	Y	I	D	R	S	E	P	S	F	A	V	A	E	I	W	T	S	L	A	Y	G	G
Template Known Secondary structure													T	T								T	T	G	G	G	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													S												B		T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.																									.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.

	464	.	.	.	.														.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	P	G	V	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	D	M	G	G	L	G	F	W	Y	K	W	N	L	G	W	M	H	D	T	L	D	Y	M	K	L	D	P	V	Y	R	Q	Y	H	H	D	K	L	T	F	G	I	L	Y	N	Y	T	E	N	F	V	L	P	L	S	H	D	E	V	V	H
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	D	G	K	P	N	L	N	Q	D	Q	H	R	Q	E	L	V	N	W	V	D	K	V	G	G	K	G	P	A	T	T	F	D	F	T	T	K	G	I	L	N	V	A	V	E	G	E	L	W	R	L	R	G	T	D	G	K	A	P	G	M	I	G	W	W	P	A	K	A	V	T	F	V	D	N	H	D	T	G	S	T
Template Known Secondary structure	T	S	S	B		S																		T	T	S	S																T	T	T		G	G	G	G	S		T	T	S	S		S	S	G	G	G	T		G	G	G					S			T	T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
	214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

	531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610
Predicted Secondary structure
Query SS confidence
Query Sequence	G	K	K	S	I	L	D	R	M	P	G	D	A	W	Q	K	F	A	N	L	R	A	Y	Y	G	W	M	W	A	F	P	G	K	K	L	L	F	M	G	N	E	F	A	Q	G	R	E	W	N	H	D	A	S	L	D	W	H	L	L	E	G	G	D	N	W	H	H	G	V	Q	R	L	V	R	D	L	N	L	T	Y
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	Q	H	M	W	P	F	P	S	.	.	.	.	.	.	.	.	.	D	R	V	M	Q	G	Y	A	Y	I	L	T	H	P	G	T	P	C	I	F	Y	D	H	F	F	D	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	K	E	E	I	D	R	L	V	S	V	R
Template Known Secondary structure	T		S	S				G	.	.	.	.	.	.	.	.	.	G	G											S	S	S											T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	294	.	.	.	.	.	300	.										.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.																								.	330	.	.	.	.	.	.	.	.	.	340	.

	611	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	H	H	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence	T	R	H	G	I
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
	342	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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