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Job DescriptionP07762
Confidence100.00%DateThu Jan 5 11:00:31 GMT 2012
Rank31Aligned Residues519
% Identity18%Templatec3zt5D_
PDB info PDB header:hydrolaseChain: D: PDB Molecule:putative glucanohydrolase pep1a; PDBTitle: glge isoform 1 from streptomyces coelicolor with maltose2 bound
Resolution2.09 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   138.140..... ....150.... .....160.........170 .........180.........190.........200..
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Query Sequence  TRFSVWAP. . NARRVSVVG. QFNYWDGRRHPMRLRK. ESGIWELFIPGAHNGQLYKYEMIDANGNLRLK. . . . . . . . . . .
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Template Sequence  VSATVFREGHDAVGANVVLRDPRGRPGPWTPMRELAPGTDRWGATVTAGETG. TWSYTVEAWGDPVTTWRHHARIKIPAG
Template Known Secondary structure 

SSS


TT

B



B
SSTTS


SS.
T
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   47..50.........60.........70.........80.........90........ .100.........110.........120.....
 
   203......210 .........220.........230.........240.........250.
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Query Sequence  SDPYAFEA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QMRPETASLICGLPEKVVQTEERKKANQFDAPISIYEVHLG
Query Conservation   



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Template Conservation   
       
                                                                    
 
Template Sequence  LDTDLVLEEGARLYERAAADVPGREDRRELLAAVDALRDESRPAASRLAAALTPQVDAVLARHPLRDLVTSSDPLPLLVE
Template Known Secondary structure  SS



TTS
TTSSS





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   126...130.........140.........150.........160.........170.........180.........190.........200.....
 
   252... ....260.........270.........280.........290...... ...
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Query Sequence  SWRR. . . . . . . . . . . . . HTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDG. . . . . . . . . . . . . . . . . . . SWG
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Template Conservation           

    
        
        
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Template Sequence  RERALYGAWYEFFPRSEGTPHTPHGTFRTAARRL. PAIAAMGFDVVYLPPIHPIGTTHRKGRNNTLSATGDDVGVPWAIG
Template Known Secondary structure 



GGGS

SS

S

GGG.TT




S
B

TT

BGGGBSS

TT



TTSB
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   206...210.........220.........230......... 240.........250.........260.........270.........280....
 
   300.........310.........320.........330.........340.........350.........360.........370.. .
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Query Sequence  YQPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDDFALAEFDGTNLYEHSDPREGYHQDWNT. . . . . . L
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Template Sequence  SPEGGHDSIHPALGTLDDFDHFVTEAGKLGLEIALDFALQCSP. DHPWVHKHPEWFHHRPDGTIAHAENPPKKYQDIYPI
Template Known Secondary structure  BTTB
TTS

GGG

TT



T.TS
GGGS


TTS



TTTT

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   285....290.........300.........310.........320....... ..330.........340.........350.........360...
 
   374.....380.........390.........400.........410.........420.........430.........440.........450...
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Query Sequence  IYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQVSGA
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Template Sequence  AFDADPDGLATETVRILRHWM. DHGVRIFRVDNPHTK. . . . . . . . . . . . . . . . . . . . . . . . PVAFWERVIADINGTDPDV
Template Known Secondary structure 

SS
.TTT

S
GGGS........................

TT
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   364.....370.........380.... .....390......... 400.........410........
 
   454.....460.........470.........480.........490.........500.........510.........520.........530...
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Query Sequence  VTMAEESTDFPGVSRPQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLTFGILYNYTENFVLPLSHDEVVHGKK
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Template Sequence  IFLAEAFTRPAMMATLAQI. . . GFQQSYTY. . . . . . . . FTWRNTKQELTEYLTELSGEAASYMRPNFFANTPDILHAYL.
Template Known Secondary structure 


S
...T
S
S........GGG

STGGGGT

S
BTTB

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   419420.........430....... ..440..... ....450.........460.........470.........480......
 
   534.....540.........550.........560.........570.........580. ........590.........600.
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Query Sequence  SILDRMPGDAWQKFANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNHD. . . . . . . . . . . . ASLDWHLLEGGDNWHHGVQR
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Template Sequence  . . . . . . . . . QHGGRPAFEVRAVLAATLSPTWGIYSGYELCENTPLREGSEEYLDSEKYQLKPRDWTRAAR. . . EGTTIAP
Template Known Secondary structure  .........

STTTTTT


BSSTT

SBTT
TTSS




...T


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   487..490.........500.........510.........520.........530.........540....... ..550....
 
   602.......610.........620.........630.........640.........650.........660.........670.........680.
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Query Sequence  LVRDLNLTYRHHKAMHELDFDPYGFEWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPVPRHDYRFGINQPGKWREILNT
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Template Sequence  LVTRLNTIRRENPALRQLRDL. . . . . . HFHPTDKEEVIAYSKRQGS. NTVLVVVNLDPRHTQEATVSLDMP. . . . . . . . .
Template Known Secondary structure 
GGGG
SS

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BS
TTTT.

SSS


TG.........
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   555....560.........570..... ....580.........590.... .....600.........610........
 
   682.......690.........700.........710......... 720.......
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Query Sequence  DSMHYHGSNAGNGGTVHSDEIASHGRQHSLSLTLPPLA. . TIWLVREA
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Template Sequence  . . . QLGLDWHESVPVRDELTGETYHWGRANYVRLEPGRTPAHVCTVLR
Template Known Secondary structure  ...GGT

TT
TTTTS
TTT
S

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   619620.........630.........640.........650.........660...
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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