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Job DescriptionP07762
Confidence100.00%DateThu Jan 5 11:00:31 GMT 2012
Rank8Aligned Residues557
% Identity18%Templatec3faxA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:reticulocyte binding protein; PDBTitle: the crystal structure of gbs pullulanase sap in complex with2 maltotetraose
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   125....130....... ..140.........150.........160.. .......170.........180 .........190....
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Query Sequence  LGAHADTMDGVTG. . TRFSVWAPNARRVSVVGQFNYWDGR. . . RHPMRLRKESGIWELFIP. . . . . GAHNGQLYKYEMID
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Template Sequence  LGAVLNQ. . . . DGSKVEASLWSPSADSVTMIIYDKDNQNRVVATTPLVK. NNKGVWQTILDTKLGIKNYTGYYYLYEIK.
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T....TSS

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GGGT
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TT
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   480...... ...490.........500.........510.........520.... .....530.........540.........550...
 
   195....200.........210.. .......220........ .230.........240.........250.........260
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Query Sequence  ANGNLRLKSDPYAFEAQM. . . . . . . . . RPETASLICGLPEKVV. . QTEERKKANQFDAPISIYEVHLGSWRRHTDNN. . .
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Template Sequence  . RGDKVKILDPYAKSLAEWDSNTVNDDIKTAKAAFVNPSQLGPQNLSFAKIANFKGRQDAVIYEAHVRDFTSDQSLDGKN
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TT
S
B


BGGG

SS

S




GGGSS
TT





TT

SGGG



GGG



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   554.....560.........570.........580.........590.........600.........610.........620.........630..
 
   261........270.........280.........290.. .......300.........310.... .
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Query Sequence  FWLSYRELADQLVPYAKWMGFTHLELLPINEH. . . . . . . . . . . . . . . . . PFDGSWGYQPTGLYAPTRRFGT. . . . . . . . R
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Template Sequence  QLGTFAAFSEKL. DYLQKLGVTHIQLLPVLSYFYVNEMDKSRSTAYTSSDNNYNWGYDPQSYFALSGMYSEKPKDPSARI
Template Known Secondary structure 
TTST.T
SS

B
BSS
BTT





S

SSS
S


S
SBS
SSSB
GGG
S
TTS
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   636...640....... ..650.........660.........670.........680.........690.........700.........710....
 
   316...320.........330.........340.........350.........360.........370.........380.........390.....
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Query Sequence  DDFRYFIDAAHAAGLNVILDWVPGHFPTDDFALAEFDGTNLYEHSDPREGYHQDWNTLIYNYGRREVSNFLVGNALYWIE
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Template Sequence  AELKQLIHDIHKRGMGVILDVVYNHTAKTYLFEDIEPN. . YYHFMNEDGSPRESFGGGRLGTTHAMSRRVLVDSIKYLTS
Template Known Secondary structure  TT


S

S
TTTSTT..TSB
B
TTS
B
BSSSSB
B
TTS
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   715....720.........730.........740.........750.. .......760.........770.........780.........790..
 
   396...400.........410.........420.........430.........440.........450.........460.........470.
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Query Sequence  RFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQD. . . .
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Template Sequence  EFKVDGFRFDMMGDH. . . . . . . . . . . . . . . . . . . . . . . . DAAAIELAYKEAKAINPNMIMIGEGWRTFQGDQGKPVKPAD
Template Known Secondary structure  S


TTGGGS........................B
TT



S



BTTB


BSS
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   793......800....... ..810.........820.........830.........840........
 
   472.......480.........490......... 500.........510.........520.........530...
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Query Sequence  . . . MGGLGFWYKWNLGWMHDTLDYMKLDPVY. . . . . . . . . . . . . RQYHHDKLTFGILYNYTENFVLPLSHDEVVHGKK. .
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Template Sequence  QDWMKSTDTVGVFSDDIRNSLKSGFPNEGTPAFITGGPQSLQGIFKNIKAQPGNFEADSPGDVVQYIAAHDNLTLHDVIA
Template Known Secondary structure  GGGGGG
SS

TTSTT


TTTT

TT

TTS

SSGGG
S

SSSS
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   849850.........860.........870.........880.........890.........900.........910.........920........
 
   534.....540.........550.........560.........570.........580..
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Query Sequence  . SILDRMPGDAWQKFANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNHDA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  KSINKDPKVAEEDIHRRLRLGNVMILTSQGTAFIHSGQEYGRTKRLLNPDYMTKVSDKLPNKATLIEAVKEYPYFIHDSY
Template Known Secondary structure  T

TTTTTSSSTTTTTT


B


GGGSS






TT
SS

SS
S
GG
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   929930.........940.........950.........960.........970.........980.........990.........1000........
 
   583......590..... ....600.........610.........620.........630.. .......640......
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Query Sequence  . . . . . . . SLDWHLLEGGDNW. . HHGVQRLVRDLNLTYRHHKAMHELDFDPYGFEWLVVD. . . . . . . DKERSVLIFVRRDK
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Template Sequence  DSSDAINHFDWAAATDNNKHPISTKTQAYTAGLITLRRSTDAFRKLSKAEIDREVSLITEVGQGDIKEKDLVIAYQTID.
Template Known Secondary structure  G





TTT
T
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SS
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   1010.........1020.........1030.........1040.........1050.........1060.........1070.........1080........
 
   647..650.........660... ......670.........680.........690.........700.........710.........720.....
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Query Sequence  EGNEIIVASNFTPVPRH. DYRFGINQPGKWREILNTDSMHYHGSNAGNGGTVHSDEIASHGRQHSLSLTLPPLATIWLVR
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Template Sequence  SGDIYAVFVNADSKARNVLLGEKYKHLLKGQVIVDADQA. . GIKPISTPRGVHFEKD. . . . . . . . . SLLIDPLTAIVIKV
Template Known Secondary structure 



SSS

GGGGGS
SS
B..SSS

SS
SS
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   10891090.........1100.........1110.........1120....... ..1130.........1140... ......1150.......
 
   726.
Predicted Secondary structure 

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Query Sequence  EA
Query Conservation 
 
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Template Conservation   
Template Sequence  GK
Template Known Secondary structure 

Template Predicted Secondary structure 

Template SS confidence 

   11591160
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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