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Job DescriptionP07762
Confidence100.00%DateThu Jan 5 11:00:31 GMT 2012
Rank35Aligned Residues434
% Identity15%Templatec2zidA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:dextran glucosidase; PDBTitle: crystal structure of dextran glucosidase e236q complex with2 isomaltotriose
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   236...240.........250.........260.........270.........280.........290.........300.........310.....
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Query Sequence  ANQFDAPISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTR
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Template Sequence  QKHWWHKATVYQIYPKSFM. DTNGDGIGDLKGITSKL. DYLQKLGVMAIWLSPVYDSPMD. DNGYDIANYEAIADIFGNM
Template Known Secondary structure 


GGGG


GGGT
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SSSSSS

TT.T
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T.TTTSS
S
GGG

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   2.......10.........20 .........30....... ..40.........50......... 60.........70........
 
   316...320.........330.........340........ .350.........360.........370...
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Query Sequence  DDFRYFIDAAHAAGLNVILDWVPGHFPTDDFAL. . . . . . AEFDGTNLYEHSDPREGYHQDWNTL. . . . . . . . . . . . . . . .
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Template Sequence  ADMDNLLTQAKMRGIKIIMDLVVNHTSDEHAWFIEAREHPDSSERDYYIWCDQPNDLESIFGGSAWQYDDKSDQYYLHFF
Template Known Secondary structure  TTT


SB

TTS
TTSGGGGGB
SS

S
B
TTSSBSTTTT
SS
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   7980.........90.........100.........110.........120.........130.........140.........150........
 
   374.....380.........390.........400.........410.........420.........430.........440........
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Query Sequence  . . . . . IYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGE
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Template Sequence  SKKQPDLNWENANLRQKIYDMMNFWI. DKGIGGFRMDVIDMIGKIPAQHIVS. . . . . . . . . . NGPKLHAYLKEMNAASFG
Template Known Secondary structure 
TTS
BB
TT
.TTT

TTGGGTT
BGGGTB
S..........S
TTTGG
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   159160.........170.........180.... .....190.........200......... 210.........220.......
 
   449450.........460......... 470.........480.........490.........500. ........510.........
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Query Sequence  QVSGAVTMAEESTDFPGVSRP. QDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQ. . . . . . . . YHHDKLTFGILYNYTENF
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Template Conservation  .        
                                                                      
Template Sequence  . QHDLLTVGQTWGATPEIAKQYSNPVNHELSMVFQFEHIGLQHKPEAPKWDYVKELNVPALKTIFNKWQTELELGQGWNS
Template Known Secondary structure  .GS


TT


GGG
S
S

TTGGGGB
TTS
TTSB

S

S
TTT


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   228.230.........240.........250.........260.........270.........280.........290.........300......
 
   520.........530.........540.........550.........560.........570.........580..
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Query Sequence  VLPLSHDEVVHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNHDA. . . . . . . . . . . . . . . . .
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Template Sequence  LFWNNHDL. . . . . PRVLSIWGNTGKYREKSAKALAILLHLMRGTPYIYQGEEIGMTNYPFKDLNELDDIESLNYAKEAFT
Template Known Secondary structure 
S

TTS.....

S
SSTTTSSSTTGGGT






SGGG


T
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   307..310.... .....320.........330.........340.........350.........360.........370.........380.
 
   583......590. ........600.........610......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . SLDWHLLEG. . . . . . . . . . . . . . . . . . . . . . . . GDNWHHGVQRLVRDLNLTYRHHKAM
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Template Conservation                      
  
 
       
                                   
  

   
 
Template Sequence  NGKSMETIMDSIRMIGRDNARTPMQWDASQNAGFSTADKTWLPVNPNYKDINVQAALKNSNSIFYTYQQLIQLRKENDWL
Template Known Secondary structure  TT


GGGG
S




SSGGGGS

SSS
SS


GGGGTS
STTS
T
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   382.......390.........400.........410.........420.........430.........440.........450.........460.
 
   617..620.........630.........640.........650.........660.........670.........680.........690......
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Query Sequence  HELDFDPYGFEWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPVPRHDYRFGINQPGKWREILNTDSMHYHGSNAGNGGT
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Template Sequence  VDAD. . . . . . . . FELLPTADKVFAYLRKVRE. ERYLIVVNVSDQEEV. . . LEID. VDKQETLISNTNESAALA. . . . . . .
Template Known Secondary structure 
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TTTT.
SSS
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SS
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   462... ....470.........480.... .....490......... 500... ......510.........520.
 
   697..700.........710.........720....
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Query Sequence  VHSDEIASHGRQHSLSLTLPPLATIWLV
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Template Conservation  ...............   
 
    

 
Template Sequence  . . . . . . . . . . . . . . . NHKLQPWDAFCIK
Template Known Secondary structure  ...............T
TT
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   522.......530....
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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