 |
Job Description | P07762 | Confidence | 78.96% | Date | Thu Jan 5 11:00:31 GMT 2012 |
Rank | 382 | Aligned Residues | 66 |
% Identity | 12% | Template | c2zdsB_ |
PDB info |
PDB header:dna binding protein | Chain: B: PDB Molecule:putative dna-binding protein; |
PDBTitle: crystal structure of sco6571 from streptomyces coelicolor2 a3(2)
|
Resolution | 2.30 Å |
|
 |
  |   |
240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | A | P | I | S | I | Y | E | V | H | L | G | S | W | R | R | H | T | D | N | N | F | W | L | S | Y | R | E | L | A | D | Q | L | V | P | Y | A | K | W | M | G | F | T | H | L | E | L | L | P | I | N | E | H | P | F | D | G | S | W | G | Y | Q | P | T | G | L | Y | A | P | T | R | R | F | G | T | R | D | D | F | R |
Query Conservation |   |
  |   |   |   |   |
|
|
|   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |   |
|
|   |
|
|
|
|
|
|
|
|   |
|   |
|
|
|
|   |
|   |
|   |   |   |   |
|
|
|
|   |   |   |
|   |
|   |   |   |   |
|
|
|   |   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |
|   |
|   |   |   |
|   |   |
|   |   |
|
|
|
|   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
P | R | N | F | T | L | F | T | G | Q | W | A | D | L | P | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
L | E | E | V | C | R | L | A | R | D | F | G | Y | D | G | L | E | L | A | C | W | G | D | H | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
F | E | V | D | K | A | L | A | D | P | S | Y | V | D |
Template Known Secondary structure |   |
|
|
|  |  |  |  |
| G | G | G | T | T | S |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  |  | S | S | T | T | T | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |
| T | T |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|  |  |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . |
  |
  |   |
320 | . | . | . | . | . | . | . | . | . | 330 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | F | I | D | A | A | H | A | A | G | L | N | V |
Query Conservation |   |
  |
|
|
|   |
|
|   |   |
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|   |   |   |
|
|   |
|
Template Sequence |   |
S | R | H | Q | L | L | D | K | Y | G | L | K | C |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  | T | T |
| B |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
54 | . | . | . | . | . | 60 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|