Return to main results Retrieve Phyre Job Id

Job DescriptionP07762
Confidence100.00%DateThu Jan 5 11:00:31 GMT 2012
Rank68Aligned Residues356
% Identity17%Templatec2qpuB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:alpha-amylase type a isozyme; PDBTitle: sugar tongs mutant s378p in complex with acarbose
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   247..250.........260.........270.........280.........290.........300.........310 .........320.....
Predicted Secondary structure 










































.



Query SS confidence 































































.














Query Sequence  EVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTR. RFGTRDDFRYFIDAA
Query Conservation 
 

  
         


      

 







 
 



 
 
    



   
 
   . 


  


 


 
Alig confidence 

























.















..


















.














Template Conservation   
  
 
 

     


  

  

.


  


 



 

..      


   

  

    

  


 

  
Template Sequence  QVLFQGFNWESWKQSGGWYNMMMGKV. DDIAAAGVTHVWLPPP. . SHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGAL
Template Known Secondary structure 




TTGGG
TT
GGG.TT




..S
BSSTTS
SB

TT
GGG
SS

Template Predicted Secondary structure 









.






..




















Template SS confidence 















































































   2.......10.........20....... ..30.........40... ......50.........60.........70........
 
   326...330.........340.........350 .........360.........370.........380...
Predicted Secondary structure 













......................




























Query SS confidence 
























. . . . . . . . . . . . . . . . . . . . . .
































Query Sequence  HAAGLNVILDWVPGHFPTDDFALAE. . . . . . . . . . . . . . . . . . . . . . FDGTNLYEHSDPREGYHQDWNTLIYNYGRREVS
Query Conservation 
  

 





 

          ...................... 

   
            

    
     

Alig confidence 
























......................
































Template Conservation 
  

 



 
 

                                                       


  

 
 
Template Sequence  HGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQ
Template Known Secondary structure  TT


SB


S
TTS



SSSS
TT


GGGB
TT
TTT

S
S


SS


TTS
BB
TTS
Template Predicted Secondary structure 


































































Template SS confidence 















































































   7980.........90.........100.........110.........120.........130.........140.........150........
 
   384.....390.........400.........410.........420.........430.........440.........450.........460...
Predicted Secondary structure 







































Query SS confidence 















































































Query Sequence  NFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDF
Query Conservation    
 
   


 







 


  
                 
         

      
    
   



     
Alig confidence 


























........................











....












Template Conservation    
      

   





 


  
........................            ....      

     
Template Sequence  RELKEWLLWLKSDLGFDAWRLDFARGY. . . . . . . . . . . . . . . . . . . . . . . . SPEMAKVYIDGT. . . . SPSLAVAEVWDNM
Template Known Secondary structure  TT


TTGGGS........................
....

S






Template Predicted Secondary structure 









........................

....





Template SS confidence 















































































   159160.........170.........180..... ....190....... ..200.........210
 
   464.....470.. .......480.........490.........500.........510.........520.....
Predicted Secondary structure 




..................























Query SS confidence 








. . . . . . . . . . . . . . . . . .




















































Query Sequence  PGVSRPQDM. . . . . . . . . . . . . . . . . . GGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLTFGILYNYTENFVLPLSH
Query Conservation           ..................

 


   
                         
               

Alig confidence 








..................




















































Template Conservation                                     


                                   
 

 

Template Sequence  ATGGDGKPNYDQDAHRQNLVNWVDKVGGAASAGMVFDFTTKGILNAAVEGELWRLIDPQGKAPGVMGWWPAKAVTFVDNH
Template Known Secondary structure 
B
TTS
B
S

TGGGSS
TTT
GGGSS
TTSS
SSGGGT
GGGS

T
Template Predicted Secondary structure 






































Template SS confidence 















































































   211........220.........230.........240.........250.........260.........270.........280.........290
 
   526...530.........540.........550.........560.........570.........580.........590.........600.....
Predicted Secondary structure 














































Query SS confidence 















































































Query Sequence  DEVVHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNHDASLDWHLLEGGDNWHHGVQRLVRD
Query Conservation 
                        


 
  

 

 
 
  
 
 
           

            
    
 
Alig confidence 












.........


























.......................







Template Conservation 
  
         .........     
 
 


 

 
 





   .......................     
  
Template Sequence  DTGSTQAMWPFPS. . . . . . . . . DKVMQGYAYILTHPGIPCIFYDHFFNW. . . . . . . . . . . . . . . . . . . . . . . GFKDQIAA
Template Known Secondary structure  TTSTTT
SS


G.........GGTTSSSTS.......................S
Template Predicted Secondary structure 







.........










.......................
Template SS confidence 















































































   291........300... ......310.........320.........330 ........
 
   606...610.........620.........630.........640.........650.........660.........670.........680...
Predicted Secondary structure 

































Query SS confidence 













































































Query Sequence  LNLTYRHHKAMHELDFDPYGFEWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPVPRHDYRFGINQPGKWREILNTDS
Query Conservation 

 


  


   
                 



 
    
  



 


        
 

  
    




 
Alig confidence 














........














....












.....







.








Template Conservation 

 

    

  
 ........              
....     
  
    .....        .      
  
Template Sequence  LVAIRKRNGITATSA. . . . . . . . LKILMHEGDAYVAEI. . . . DGKVVVKIGPRYD. . . . . VGAVIPAG. FVTSAHGND
Template Known Secondary structure  TT

TT

........TT....TTTSS


.....
GGGS
TT.
TT
Template Predicted Secondary structure 





........


....






.....







.


Template SS confidence 













































































   339340.........350... ......360........ .370.........380. ........ 390........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions