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Job DescriptionP07762
Confidence100.00%DateThu Jan 5 11:00:31 GMT 2012
Rank79Aligned Residues378
% Identity11%Templatec2gdvA_
PDB info PDB header:transferaseChain: A: PDB Molecule:sucrose phosphorylase; PDBTitle: sucrose phosphorylase from bifidobacterium adolescentis2 reacted with sucrose
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   257..260.........270.........280.........290.........300.........310.........320.........330......
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Query Sequence  TDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVILDW
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Template Sequence  ADRLGDGTIKSMTDIL. RTRFDGVYDGVHILPFFTPFDGADAGFDPIDHTKVDERLGSWDDVAELS. . . . . KTHNIMVDA
Template Known Secondary structure  SSSBSSSS.STTT
S



SSSSSTTSS
S
TTT

T.....TTS
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   11........20...... ...30.........40.........50.........60.........70..... ....80....
 
   337..340........ .350.........360.........370 ......
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Query Sequence  VPGHFPTDDFAL. . . . AEFDGTNLYEHSDPREGYHQDW. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NTLIYN
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Template Sequence  IVNHMSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGATEEDLAGIYRPRPGLPFTHYKFAGKTRLVWVSFTPQQVDID
Template Known Secondary structure 
STTSGGGSTTGGGB
B
TT


TS

SSSS
STT
SSSTTB
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   85....90.........100.........110.........120.........130.........140.........150.........160....
 
   377..380.........390.........400.........410.........420.........430.........440.........450......
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Query Sequence  YGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTM
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Template Sequence  TDSDKGWEYLMSIFDQMA. ASHVSYIRLDAVGYG. . . . . . . . . . . AKEAGTSCFMTPKTFKLISRLREEG. . VKRGLEIL
Template Known Secondary structure  TTS.TT

TGGGS...........


TTS
SSS
..TTT
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   165....170.........180.. .......190....... ..200.........210.........220.. .......230
 
   457..460.........470.........480.........490.........500.........510.........520.........530......
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Query Sequence  AEESTDFPGVSRPQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLTFGILYNYTENFVLPLSHDEVVHGKKSIL
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Template Sequence  IEVHSYYKKQVEIASK. . . . VDRVYDFALPPLLLHALSTG. . . . . . HVEPVAHWTDIRPNNAVTVLDTHDGIGVIDIGSD
Template Known Secondary structure 


S
GGG....SS
S
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S
SS
S

SS
B
STTTS

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   231........240...... ...250.........260...... ...270.........280.........290.........300
 
   537..540.... .....550.........560.........
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Query Sequence  DRMPGDAW. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QKFANLRAYYGWMWAFPGKKLLFMG
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Template Sequence  QLDRSLKGLVPDEDVDNLVNTIHANTHGESQAATGAAASNLDLYQVNSTYYSALGCNDQHYIAARAVQFFLPGVPQVYYV
Template Known Secondary structure  SS
TTS

SS
TTTSGGGSB
S
SSSB
S
TTT
SSS
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   301........310.........320.........330.........340.........350.........360.........370.........380
 
   570.... .....580.........590.........600.........610.........620.........630........
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Query Sequence  NEFAQ. . . . . . . . . . . GREWNHDASLDWHLLEGGDNWHHGVQRLVRDLNLTYRHHKAMHELDFDPYGFEWLVVDDKERSV
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Template Sequence  GALAGKNDMELLRKTNNGRDINRHYYSTAEIDEN. . LKRPVVKALNALAKFRNELDAFD. GT. . . . . . . . FSYTTDDDTS
Template Known Secondary structure  TT




BGGGGG


B
..TTS
GGGG.S........TTT
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   381........390.........400.........410.... .....420.........430....... .. 440.........
 
   639640.........650.........660.........670.......
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Query Sequence  LIFVRRDKEGNEIIVASNFTPVPRHDYRFGINQPGKWRE
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Template Sequence  ISFTWRGET. SQATLTFEPKRGLGVDNTTPVA. MLEWED
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SS.

GGGG
STT

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   450........ .460.........470.........480 ......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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