Phyre 2 alignment of P07762 with c1zy9A

Job Description P07762
Confidence 98.34% Date Thu Jan 5 11:00:31 GMT 2012

Rank 125 Aligned Residues 311

% Identity 12% Template c1zy9A_

PDB info PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase; PDBTitle: crystal structure of alpha-galactosidase (ec 3.2.1.22) (melibiase)2 (tm1192) from thermotoga maritima at 2.34 a resolution

Resolution 2.34 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	Y	R	E	L	A	D	Q	L	V	P	Y	A	K	W	M	G	F	T	H	L	E	L	L	P	I	N	E	H	P	F	D	G	S	W	G	Y	Q	P	T	G	L	Y	A	P	T	R	R	F	G	T	R	D	D	F	R	Y	F	I	D	A	A	H	A	A	G	L	N	V	I	L	D	W	V	P	G	H	F	P	T
Query Conservation
Alig confidence										.														.	.	.	.	.	.	.	.																				.	.	.
Template Conservation										.														.	.	.	.	.	.	.	.																				.	.	.
Template Sequence	T	W	E	E	T	L	K	N	L	.	K	L	A	K	N	F	P	F	E	V	F	Q	I	.	.	.	.	.	.	.	.	D	D	A	Y	E	K	D	I	G	D	W	L	V	T	R	G	D	F	P	.	.	.	S	V	E	E	X	A	K	V	I	A	E	N	G	F	I	P	G	I	W	T	A	P	F	S	V	S	E
Template Known Secondary structure										.			G	G	G	T	T		S					.	.	.	.	.	.	.	.		T	T	S				T	T							T	T			.	.	.												T	T									T	T				T
Template Predicted Secondary structure										.														.	.	.	.	.	.	.	.																				.	.	.
Template SS confidence
	198	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.									220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.				.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.

	344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370		.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence	D	D	F	A	L	A	E	F	D	G	T	N	L	Y	E	H	S	D	P	R	E	G	Y	H	Q	D	W	.	N	T	L	I	Y	N	Y	G	R	R	E	V	S	N	F	L	V	G	N	A	L	Y	W	I	E	R	F	G	I	D	A	L	R	V	D	A	V	A	S	M	I	Y	R	D	Y	S	R	K	E	G	E	W
Query Conservation																												.
Alig confidence																												.																							.
Template Conservation																																																			.
Template Sequence	T	S	D	V	F	N	E	H	P	D	W	V	V	K	E	N	G	E	P	K	X	A	Y	R	N	W	N	K	K	I	Y	A	L	D	L	S	K	D	E	V	L	N	W	L	F	D	L	F	S	S	.	L	R	K	X	G	Y	R	Y	F	K	I	D	F	L	F	A	G	A	V	P	G	E	R	K	K	N	I	T	P
Template Known Secondary structure	T								G	G	G	B				T	T									T	T						B		T	T															.				T	T									G	G	G	G	G		S	S	B		S	S	S
Template Predicted Secondary structure																																																			.
Template SS confidence
	266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

	423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.		.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.									.	.	.	.	.	.	490	.	.	.
Predicted Secondary structure																																												.																			.	.	.	.	.	.	.	.
Query SS confidence																																												.																			.	.	.	.	.	.	.	.
Query Sequence	I	P	N	E	F	G	G	R	E	N	L	E	A	I	E	F	L	R	N	T	N	R	I	L	G	E	Q	V	S	G	A	V	T	M	A	E	E	S	T	D	F	P	G	.	V	S	R	P	Q	D	M	G	G	L	G	F	W	Y	K	W	N	L	.	.	.	.	.	.	.	.	G	W	M	H	D	T	L	D	Y	M
Query Conservation																																												.																			.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.																														.																			.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	I	Q	.	.	.	.	.	.	.	.	.	.	.	.	A	F	R	K	G	I	E	T	I	R	K	A	V	G	E	D	S	F	I	L	G	C	G	S	P	L	L	P	A	V	G	C	V	D	G	X	R	I	G	P	D	T	A	P	F	W	G	E	H	I	E	D	N	G	A	P	A	A	R	W	A	L	R	N	A	I
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.															T	T	S						S		B	S	G	G	G	T	T	T		S					S	S				S	S			T	T	S		S	S	S	S	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	345	.													.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.

	494	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	L	D	P	V	Y	R	Q	Y	H	H	D	K	L	T	F	G	I	L	Y	N	Y	T	E	N	F	V	L	P	L	S	H	D	E	V	V	H	G	K	K	S	I	L	D	R	M	P	G	D	A	W	Q	K	F	A	N	L	R	A	Y	Y	G	W	M	W	A	F	P	G	K	K	L	L	F	M	G	N	E	F	A
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Sequence	T	R	Y	F	X	H	D	R	F	W	L	N	D	P	D	C	L	I	L	R	E	E	K	T	D	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	K	E	K	E	L	Y	S	Y	T	C	G	V	L	D	N	X	I	I	E	S	D	D	.	.	.
Template Known Secondary structure		T	G	G	G	B	T	T	T	B							B				S	S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T							S		.	.	.
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template SS confidence
	413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.																												440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.

	574	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	G	R	E	W	N	H	D	A	S	L	D	W	H	L	L	E	G	G	D	N	W	H	H	G	V	Q	R	L	V	R	D	L	N	L	T	Y	R	H	H	K	A	M	H	E	L	D	F	D	P	Y	G	F	E	W	L	V	V	D	D	K	E	R	S	V	L	I	F	V	R	R	D	K	E
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	L	V	R	D	H	G	K	K	V	L	K	E	T	L	E	L	L	G	G	R	P	R	V	Q	N	I	X	S	E	D	L	R	Y	E	I	V	S	S	G	T	L	S	G	N	V	K	I	V	V	D	L	N	S	R
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G														T	T		S	S					T	T	T	T		S	S	S										T	T									T	T	T	T
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																			463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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