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Job DescriptionP07762
Confidence100.00%DateThu Jan 5 11:00:31 GMT 2012
Rank18Aligned Residues531
% Identity17%Templatec1ea9D_
PDB info PDB header:hydrolaseChain: D: PDB Molecule:cyclomaltodextrinase; PDBTitle: cyclomaltodextrinase
Resolution3.2 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   115....120.........130.........140...... ...150... ......160 .........170... ......180......
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Query Sequence  EGTHLRPYETLGAHADTMDGVTGTRFSVWAPN. . ARRVSVV. GQFNYWD. . GRRHPMRLRKESG. . . IWELFIPGAHNGQ
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Template Conservation    
 
      
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Template Sequence  EAVYHRPRKNFSYAYNG. . . . TTVHLRIRTKKDDMTAVYALAGDKYMWDHTMEYVPMTKLATDELFDYWECEVTPPYRRV
Template Known Secondary structure  GG
B

SBTTTT....TB
BTT

S


B
TTS
TTT






SSB



GGG
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   4.....10.........20 .........30.........40.........50.........60.........70.........
 
   187..190.........200.........210.........220.........230.........240.........250.........260
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Query Sequence  LYKYEMIDANGNLRLKSDPYAFEAQMRPETASLICGLPEKVVQTEERKKANQFDAPISIYEVHLGSWRRHTDNN. . . . . .
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Template Sequence  KYGFLLQ. . QGHEKRWMTEYDFLTEPPANPDRLFEY. . PFINPVDVFQPPAWVKD. AIFYQIFPERFANGDTRNDPEGTL
Template Known Secondary structure 
B


..SSS



B
SS


SS

SSSSSS..



GGGS



TTTTS.



GGGT



S
S
SS


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   80...... ...90.........100.........110... ......120.........130 .........140.........150....
 
   261........270.........280.........290.........300.........310.........320........
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Query Sequence  . . . . . . . . . . . . FWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAA
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Template Sequence  PWGSADPTPSCFFGGDLQGVIDHL. DHLSKLGVNAVYFTPLFKATT. . NHKYDTEDYFQIDPQFGDKDTLKKLVDLCHER
Template Known Secondary structure 

SSS


SS





ST
.TTTTTTT







S..SSTTS
S
TTT

TT
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   155....160.........170........ .180.........190......... 200.........210.........220.........230.
 
   329330.........340........ .350.........360.........370... ......380.........390.
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Query Sequence  GLNVILDWVPGHFPTDDFAL. . . . . . . . . . . . . . AEFDGTNLYEHSDPREGYHQDWNTL. . . IYNYGRREVSNFLVGNAL
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Template Sequence  GIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVDGIPTYDTFAFEPLMPKLNTEHPDVKEYLLKAAE
Template Known Secondary structure  T



SB

TTSTTT
GGGGGB
BSSSS


SSSS
SB
BSSS
TT
BBB
TTS
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   232.......240.........250.........260.........270.........280.........290.........300.........310.
 
   392.......400.........410.........420.........430.........440.........450.........460.........470.
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Query Sequence  YWIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQD
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Template Sequence  YWIRETGIDGWRLDVANEV. . . . . . . . . . . . . . . . . . . . . . . . SHQFWREFRRVVKQANPDAYILGEVWHE. . . . . SSIW
Template Known Secondary structure  T

TTGGGS........................

TT



S
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SGG
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   312.......320.........330 .........340.........350........ .360..
 
   472.......480.........490.........500.........510........ .520.........530.........540.......
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Query Sequence  MGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLTFGILYNYTEN. . . . FVLPLSHDEVVHGKKSILDRMPGDAWQKF
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Template Sequence  LEGDQFDAVMNYPFTNAVLDFFIHQIADAEKFSFMLGKQLAGYPRQASEVMFNLLDSHDTARLLTQADGDK. . . . . . . . .
Template Known Secondary structure  GSSSS
SS

TTSS

S
TTS

SS
TTS

TTS
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   363......370.........380.........390.........400.........410.........420.........430...
 
   548.550.........560.........570.........580... ......590.........600.........610.........620.....
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Query Sequence  ANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNHDAS. . LDWHLLEGGDNWHHGVQRLVRDLNLTYRHHKAMHELDFDPYG
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Template Sequence  RKMKLAVLFQFTYFGTPCIYYGDEVGLDGGHDPGCRKCMEWD. . . . ETKHDKDLFAFYQTVIRLRQAHAALRTGTFK. . .
Template Known Secondary structure  SSSTTTTT

S

STTSS






....TTT


TS...
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   434.....440.........450.........460.........470..... ....480.........490.........500......
 
   626...630.........640.........650.........660.........670.........680.........690.........700.....
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Query Sequence  FEWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPVPRHDYRFGINQPGKWREILNTDSMHYHGSNAGNGGTVHSDEIASH
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Template Sequence  . . . FLTAEKNSRQIAYLREDDQ. DTILVVMNNDKAGHT. LTLPVR. HAQWTHLWQDD. . . . . . . . . . . . . . . . . . . . VLT
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TT

TT.



TT


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.SSS




SSS....................


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   507..510.........520..... ....530.........540 ...... ...550....... ..560
 
   706...710.........720........
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Query Sequence  GRQHSLSLTLPPLATIWLVREAE
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Template Conservation     
   
 
      

    
Template Sequence  AAHGQLTVKLPAYGFAVLKASSD
Template Known Secondary structure 



SSS



TT




B

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   561........570.........580...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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