Return to main results Retrieve Phyre Job Id

Job DescriptionP0A8R9
Confidence100.00%DateThu Jan 5 11:08:36 GMT 2012
Rank5Aligned Residues272
% Identity17%Templatec3t1bB_
PDB info PDB header:transcriptionChain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: crystal structure of the full-length aphb n100e variant
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MDTELLKTFLEVSRTRHFGRAAESLYLTQSAVSFRIRQLENQLGVNLFTRHRNNIRLTAAGEKLLPYAETLMSTWQAARK
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Template Sequence  MKLDDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGERFYKDCSPLLERLASMTE
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   1........10.........20.........30.........40.........50.........60.........70.........80
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  EVAHTSRHNEFSIGASASLWECMLNQWLGRLYQNQDAHTGLQFEARIAQRQSLVKQLHERQLDLLITTEAPKMDEFSSQL
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Template Sequence  EITDECRGASGRIRISAP. SELTKRMMMPMFNAFMEKYPDIHIELMMSNQADL. . . . DPTEWDVIFRVGPQRDSSLIARK
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   81........90........ .100.........110.........120.........130.. .......140.........150.....
 
   161........170.........180.........190.. .......200.........210.........220........
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Query Sequence  LGYFTLALYTSAPSKLKGDLNYLRLEWGPDFQ. . . . . . . . . . . . QHEAGLIGADEVPILTTSSAELAQQQIAMLNGCTWL
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Template Sequence  IGEVKDILVASPQYLSSHPQPTHAEELHQHQLLKGYPLLKWQLTNSQGETVVNSDRGRFQASALNVVRSACSEGLGITLM
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SSGGGGGGS
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   157..160.........170.........180.........190.........200.........210.........220.........230......
 
   229230..... ....240.. .......250.........260.........270.........
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Query Sequence  PVSWARK. . . KGGLHTV. VDSTTLSRPLYAIWLQNSDKNALIRDLLKINVLDEVY
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Template Sequence  PDVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDF. . VIGYH
Template Known Secondary structure  GGGTTSS

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   237..240.........250.........260.........270.........280.... .....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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