Job Description P0A8R9 Confidence 100.00% Date Thu Jan 5 11:08:36 GMT 2012 Rank 7 Aligned Residues 260 % Identity 16% Template c3fzvC_ PDB info PDB header:transcription regulator Chain: C: PDB Molecule:probable transcriptional regulator; PDBTitle: crystal structure of pa01 protein, putative lysr family2 transcriptional regulator from pseudomonas aeruginosa Resolution 2.71 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	T	E	L	L	K	T	F	L	E	V	S	R	T	R	H	F	G	R	A	A	E	S	L	Y	L	T	Q	S	A	V	S	F	R	I	R	Q	L	E	N	Q	L	G	V	N	L	F	T	R	H	R	N	N	I	R	L	T	A	A	G	E	K	L	L	P	Y	A	E	T	L	M	S	T	W	Q	A	A	R	K
Query Conservation
Alig confidence																																																																									.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		Y	T	L	R	Q	L	K	Y	F	V	T	T	V	E	C	G	S	V	A	E	A	S	R	K	L	Y	I	A	Q	P	S	I	S	T	A	V	K	G	L	E	E	S	F	G	V	Q	L	F	S	L	T	P	A	G	A	R	F	Y	R	K	A	Q	E	L	L	R	X	A	H	E	F	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																	S	S								T	T																		T	S																										T	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	A	H	T	S	R	H	N	E	F	S	I	G	A	S	A	S	L	W	E	C	M	L	N	Q	W	L	G	R	L	Y	Q	N	Q	D	A	H	T	G	L	Q	F	E	A	R	I	A	Q	R	Q	S	L	V	K	Q	L	H	E	R	Q	L	D	L	L	I	T	T	E	A	P	K	M	D	E	F	S	S	Q	L
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	E	Q	N	D	V	I	A	G	Q	I	D	I	G	C	F	E	T	V	A	P	L	Y	L	P	G	L	I	A	G	F	R	Q	A	Y	P	G	V	E	I	R	I	R	D	G	E	Q	Q	E	L	V	Q	G	L	T	S	G	R	F	D	L	A	F	L	Y	E	H	D	L	D	S	T	I	E	T	E	P
Template Known Secondary structure		.	.	.	.																T	T	T																	T	T																				T	S		S						S	S	S			T	T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.														.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	Y	F	T	L	A	L	Y	T	S	A	P	S	K	L	K	G	D	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	L	R	L	E	W	G	P	D	F	Q	Q	H	E	A	G	L	I	G	A	D	E	V	P	I	L	T	T	S	S	A	E	L	A	Q	Q	Q	I	A	M	L	N	G	C	T	W
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	X	P	P	Q	R	P	H	A	L	L	P	E	G	H	R	F	A	G	Q	A	Q	V	S	L	R	D	L	C	L	E	P	X	I	L	L	D	V	Q	P	S	R	T	Y	F	V	S	L	F	E	E	L	G	L	T	P	N	I	A	F	S	S	P	S	I	E	X	V	R	G	X	V	G	Q	G	F	G	F	S	L
Template Known Secondary structure		S	S			B								T	T		T	T	T	T	S	S								T	T	S								T	T												T	T										S											T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		228	.	230	.	.	.	.	.	.						.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure											.	.	.	.	.
Query SS confidence											.	.	.	.	.
Query Sequence		L	P	V	S	W	A	R	K	K	.	.	.	.	.	G	G	L	H	T	V	V	D	S	T	T	L	S	R	P	L	Y	A	I	W	L	Q	N	S	D	K	N	A	L	I	R	D	L	L	K	I	N
Query Conservation											.	.	.	.	.
Alig confidence											.	.	.	.	.
Template Conservation
Template Sequence		L	V	T	R	P	H	S	E	C	T	Y	D	G	K	K	V	V	X	V	D	L	A	E	P	V	S	T	S	G	L	A	A	A	W	L	K	R	A	Q	L	T	K	P	A	R	L	F	V	D	Y	C
Template Known Secondary structure							S			B		T	T	S		B							S	S				B									S	S	S
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions