Job Description P0A8R9 Confidence 99.37% Date Thu Jan 5 11:08:36 GMT 2012 Rank 32 Aligned Residues 182 % Identity 17% Template c2h9bB_ PDB info PDB header:transcription Chain: B: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: crystal structure of the effector binding domain of a benm variant2 (benm r156h/t157s) Resolution 1.80 Å

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		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	N	E	F	S	I	G	A	S	A	S	L	W	E	C	M	L	N	Q	W	L	G	R	L	Y	Q	N	Q	D	A	H	T	G	L	Q	F	E	A	R	I	A	Q	R	Q	S	L	V	K	Q	L	H	E	R	Q	L	D	L	L	I	T	T	E	A	P	K	M	D	E	F	S	S	Q	L	L	G	Y	F	T	L	A
Query Conservation
Alig confidence																									.	.	.
Template Conservation																									.	.	.
Template Sequence		E	K	T	I	R	I	G	F	V	G	S	L	L	F	G	L	L	P	R	I	I	H	L	.	.	.	Y	R	Q	A	H	P	N	L	R	I	E	L	Y	E	M	G	T	K	A	Q	T	E	A	L	K	E	G	R	I	D	A	G	F	G	R	L	K	I	S	D	P	A	I	K	H	S	L	L	R	N	E	R	L	M
Template Known Secondary structure											G	G	G	G	G	T	T								.	.	.						T	T																				T	S		S					S	S					T	T
Template Predicted Secondary structure																									.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.																		.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Y	T	S	A	P	S	K	L	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	N	Y	L	R	L	E	W	G	P	D	F	Q	Q	H	E	A	G	L	I	G	A	D	E	V	P	I	L	T	T	S	S	A	E	L	A	Q	Q	Q	I	A	M	L	N	G	C	T	W	L	P	V
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	A	V	H	A	S	H	P	L	N	Q	M	K	D	K	G	V	H	L	N	D	L	I	D	E	K	I	L	L	Y	P	S	S	P	K	P	N	F	S	T	H	V	M	N	I	F	S	D	H	G	L	E	P	T	K	I	N	E	V	R	E	V	Q	L	A	L	G	L	V	A	A	G	E	G	I	S	L	V	P	A
Template Known Secondary structure						T	T	S	G	G	G	G	G	T	T	T		B		G	G	G	S	T	T	S								S	S	S	S	S											T	T	T				S						S											T	T	S		B					G
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		231	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		S	W	A	R	K	K	.	.	G	G	L	H	T	V	V	D	S	T	T	L	S	R	P	L	Y	A	I	W	L	Q	N	S	D	K	N	A	L	I	R	D	L	L	K	I	N
Query Conservation								.	.
Alig confidence								.	.																								.
Template Conservation																																	.
Template Sequence		S	T	Q	S	I	Q	L	F	N	L	S	Y	V	P	L	L	D	P	D	A	I	T	P	I	Y	I	A	V	R	N	M	.	E	E	S	T	Y	I	Y	S	L	Y	E	T	I
Template Known Secondary structure		G	G	G	G				T	T						B		S	T	T											S	S	.
Template Predicted Secondary structure																																	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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