Job Description P0ACC7 Confidence 99.92% Date Thu Jan 5 11:17:54 GMT 2012 Rank 45 Aligned Residues 229 % Identity 21% Template c3oamD_ PDB info PDB header:transferase Chain: D: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: crystal structure of cytidylyltransferase from vibrio cholerae Resolution 1.75 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.	.	80	.	.
Predicted Secondary structure																																																																									.	.
Query SS confidence																																																																									.	.
Query Sequence		A	M	S	V	V	I	L	A	A	G	K	G	T	R	M	Y	S	D	L	P	K	V	L	H	T	L	A	G	K	A	M	V	Q	H	V	I	D	A	A	N	E	L	G	A	A	H	V	H	L	V	Y	G	H	G	G	D	L	L	K	Q	A	L	K	D	D	N	L	N	W	V	L	.	.	Q	A	E	Q	L	G	T
Query Conservation																																																																									.	.
Alig confidence																			.	.	.																																		.	.																	.	.
Template Conservation																			.	.	.																																		.	.
Template Sequence		S	F	T	V	V	I	P	A	R	Y	Q	S	T	R	L	P	G	.	.	.	K	P	L	A	D	I	G	G	K	P	M	I	Q	W	V	Y	E	Q	A	M	Q	A	G	A	D	R	V	I	I	A	T	D	D	.	.	E	R	V	E	Q	A	V	Q	A	F	G	G	V	V	C	M	T	S	P	N	H	Q	S	G	T
Template Known Secondary structure											S			S	S	S	T	T	.	.	.	G	G	G				T	T														T	T		S							S		.	.										T	T								S	S	S			S
Template Predicted Secondary structure																			.	.	.																																		.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.				.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.			.	.	.	130	.	.	.	.	.	.	.	.	.	140							.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure												.																																			.	.															.	.	.	.	.	.
Query SS confidence												.																																			.	.															.	.	.	.	.	.
Query Sequence		G	H	A	M	Q	Q	A	A	P	F	.	F	A	D	D	E	D	I	L	M	L	Y	G	D	V	P	L	I	S	V	E	T	L	Q	R	L	R	D	A	K	P	Q	G	G	I	.	.	G	L	L	T	V	K	L	D	D	P	T	G	Y	G	.	.	.	.	.	.	R	I	T	R	E	N	G	K	V	T	G	I	V
Query Conservation												.																																			.	.															.	.	.	.	.	.
Alig confidence												.																																			.	.															.	.	.	.	.	.
Template Conservation
Template Sequence		E	R	L	A	E	V	V	A	K	M	A	I	P	A	D	H	I	V	V	N	V	Q	G	D	E	P	L	I	P	P	A	I	I	R	Q	V	A	D	N	L	A	A	C	S	A	P	M	A	T	L	A	V	E	I	E	D	E	A	E	V	F	N	P	N	A	V	K	V	I	T	D	K	S	G	Y	A	L	Y	F	S
Template Known Secondary structure											T	T			T	T								T	T		T	T															T	S	S		S															T		T	T	S							T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		154	.	.										.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.
Query Sequence		E	H	K	.	.	.	.	.	.	.	.	.	D	A	T	D	E	Q	R	Q	I	Q	E	I	N	T	G	I	L	I	A	N	G	A	D	M	K	R	W	L	A	K	L	T	N	N	N	A	Q	G	E	Y	Y	I	T	D	I	I	A	L	A	Y	Q	E	G	R	E	I	V	A	V	H	P	Q	R	L	S	E	V	E
Query Conservation					.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.																														.	.																	.																			.
Template Conservation																																											.	.																	.																			.
Template Sequence		R	A	T	I	P	W	D	R	D	N	F	A	K	A	D	K	A	I	V	Q	P	L	L	R	H	I	G	I	Y	A	Y	R	A	G	F	I	N	T	Y	L	D	.	.	W	Q	P	S	Q	L	E	K	I	E	C	L	E	Q	L	R	.	V	L	W	H	G	E	K	I	H	V	A	V	A	L	E	A	P	P	.	A
Template Known Secondary structure		S	S		S	S							T	S	S	S					S																						.	.	S										T		T	T			.				T	T									S	S				.
Template Predicted Secondary structure																																											.	.																	.																			.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	N	N	R	L	Q	L	S	R	L	E	R	V	Y	Q	S	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	D	T	P	E	D	L	E	V	V	R	R	I	V	A	E	R
Template Known Secondary structure				S	S
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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