Job Description P0ACC7 Confidence 99.86% Date Thu Jan 5 11:17:54 GMT 2012 Rank 56 Aligned Residues 220 % Identity 15% Template c2y6pC_ PDB info PDB header:transferase Chain: C: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: evidence for a two-metal-ion-mechanism in the2 kdo-cytidylyltransferase kdsb Resolution 2.10 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	I	L	A	A	G	K	G	T	R	M	Y	S	D	L	P	K	V	L	H	T	L	A	G	K	A	M	V	Q	H	V	I	D	A	A	N	E	L	G	A	A	H	V	H	L	V	Y	G	H	G	G	D	L	L	K	Q	A	L	K	D	D	N	L	N	W	V	L	Q	A	E	Q	L	G	T	G	H	A	M	Q
Query Conservation
Alig confidence															.	.	.																																		.	.	.
Template Conservation															.	.	.																																		.	.	.
Template Sequence		V	I	I	P	A	R	L	G	S	T	R	L	K	.	.	.	E	K	P	L	K	N	L	L	G	K	P	L	I	R	W	V	V	E	G	L	V	K	T	G	E	R	V	I	L	A	T	D	S	.	.	.	E	R	V	K	E	V	V	E	D	L	C	E	V	F	L	T	P	S	D	L	P	S	G	S	D	R	V	L
Template Known Secondary structure								S			S	S	S	T	.	.	.	T	G	G	G	S			T	T													T	T	T	S							S		.	.	.								T	T	T	S							T	T		S	S
Template Predicted Secondary structure															.	.	.																																		.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.				.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50				.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.						.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																																	.	.	.	.	.																											.	.
Query SS confidence																																																	.	.	.	.	.																											.	.
Query Sequence		Q	A	A	P	F	F	A	D	D	E	D	I	L	M	L	Y	G	D	V	P	L	I	S	V	E	T	L	Q	R	L	R	D	A	K	P	Q	G	G	I	G	L	L	T	V	K	L	D	.	.	.	.	.	D	P	T	G	Y	G	R	I	T	R	E	N	G	K	V	T	G	I	V	E	H	K	D	A	T	D	.	.
Query Conservation																																																	.	.	.	.	.																											.	.
Alig confidence									.																																								.	.	.	.	.																											.	.
Template Conservation									.
Template Sequence		Y	V	V	R	D	L	D	.	V	D	L	I	I	N	Y	Q	G	D	E	P	F	V	Y	E	E	D	I	K	L	I	F	R	E	L	E	K	G	E	R	V	V	T	L	A	R	K	D	K	E	A	Y	E	R	P	E	D	V	K	V	V	L	D	R	E	G	Y	A	L	Y	F	S	R	S	P	I	P	Y	F	R	K
Template Known Secondary structure					T	T			.		S							T	T																			T		S									S	T	T	T	T		T	T	S							T	T	S	B						S	S			S			S	S
Template Predicted Secondary structure									.
Template SS confidence
		79	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	R	Q	I	Q	E	I	N	T	G	I	L	I	A	N	G	A	D	M	K	R	W	L	A	K	L	T	N	N	N	A	Q	G	E	Y	Y	I	T	D	I	I	A	L	A	Y	Q	E	G	R	E	I	V	A	V	H	P	Q	R	L	S	E	V	E	G	V	N	N	R	L	Q	L	S	R	L	E	R	V	Y
Query Conservation
Alig confidence																									.	.	.																																					.	.
Template Conservation																									.	.	.																																					.	.
Template Sequence		N	D	T	F	Y	P	L	K	H	V	G	I	Y	G	F	R	K	E	T	L	M	E	F	.	.	.	G	A	M	P	P	S	K	L	E	Q	I	E	G	L	E	Q	L	R	L	L	E	N	G	I	K	I	K	V	L	I	T	E	N	Y	Y	H	.	.	G	V	D	T	E	E	D	L	K	I	V	E	E	K	L
Template Known Secondary structure				S	S																				.	.	.		T	S										T		T							T	T										S				.	.				S									T	T
Template Predicted Secondary structure																									.	.	.																																					.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180				.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.	.	230	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions