Job Description P23522 Confidence 69.27% Date Wed Jan 25 15:20:43 GMT 2012 Rank 224 Aligned Residues 146 % Identity 22% Template c3cpgA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an unknown protein from bifidobacterium2 adolescentis Resolution 1.71 Å

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		59	60	.	.	.	.	.	.	.	.	.						70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	P	Q	L	M	A	L	K	G	S	A	.	.	.	.	.	S	A	P	V	V	R	V	P	T	N	E	P	V	I	I	K	R	L	L	D	I	G	F	Y	N	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation													.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	R	I	A	A	A	E	E	Q	A	G	R	E	A	G	S	V	R	L	L	A	A	T	K	T	R	D	I	G	E	I	X	A	A	I	D	A	G	V	R	X	I	G	E	N	R	P	Q	E	V	T	A	K	A	E	G	L	A	R	R	C	A	E	R	G	F	S	L	G	V	A	A	A	E	H	I	P	F	H	L
Template Known Secondary structure											T	T			T	T	S	S							T	T												T	T							S																			T	T
Template Predicted Secondary structure
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
																			96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	P	F	V	E	T	K	E	E	A	E	L	A	V	A	S	T	R	Y	P	P	E	G	I	R	G	V	S	V	S	H	R	A	N	M	F	G	T	V	A	D	Y	F	A	Q	S	N	K	N	I	T	I	L	V	Q	I	E	S	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	G	Q	L	Q	S	N	K	I	G	K	V	L	P	V	V	D	T	I	E	S	V	D	S	I	D	L	A	E	K	I	S	R	R	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	G	I	T	V	G	V	L	L	E	V	N	E	S	G	E	E
Template Known Secondary structure			S				G	G	G					T	T	T		S																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T									B			S	S		T
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.																											.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
									155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.					.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.						.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																													.	.	.	.																	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																																													.	.	.	.																	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	Q	Q	G	V	D	N	V	D	A	I	A	A	T	E	G	V	D	G	I	F	V	G	P	S	D	L	A	A	A	L	G	H	L	G	N	A	S	H	P	D	V	Q	K	A	.	.	.	.	I	Q	H	I	F	N	R	A	S	A	H	G	K	P	S	G	.	.	.	.	.	I	L	A	P
Query Conservation		.	.	.	.	.	.	.																																													.	.	.	.																	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.																.	.	.	.																	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.
Template Sequence		S	K	S	G	C	D	P	A	H	A	I	R	I	A	Q	K	I	G	T	L	D	G	I	E	L	Q	G	L	.	.	.	.	.	.	.	.	X	T	I	G	A	H	V	H	D	E	T	V	I	R	R	G	F	S	H	L	R	K	T	R	D	L	I	L	A	S	G	E	P	G	T	D	R	C	R	E	L	S	X	G
Template Known Secondary structure		T	S	S	S	B		G	G	G										T		T	T							.	.	.	.	.	.	.	.							S	S																									T	T		T	T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.									.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	A	D	A	R	R	Y	L	E	W	G	A	T	F	V	A	V	G	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X	T	G	D	X	E	L	A	I	A	E	G	S	T	I	V	R	V	G	T
Template Known Secondary structure			T	T	T							T	T		S					S	T
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions