Job Description P23522 Confidence 61.85% Date Wed Jan 25 15:20:43 GMT 2012 Rank 270 Aligned Residues 191 % Identity 11% Template c1w8gA_ PDB info PDB header:plp-binding protein Chain: A: PDB Molecule:hypothetical upf0001 protein yggs; PDBTitle: crystal structure of e. coli k-12 yggs Resolution 2.0 Å

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		8	.	10	.	.	.	.										.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.																																																										.	.
Query SS confidence									.	.	.	.	.	.	.	.	.																																																										.	.
Query Sequence		N	K	F	K	A	A	L	.	.	.	.	.	.	.	.	.	A	A	K	Q	V	Q	I	G	C	W	S	A	L	S	N	P	I	S	T	E	V	L	G	L	A	G	F	D	W	L	V	L	D	G	E	H	A	P	N	D	I	S	T	F	I	P	Q	L	M	A	L	K	G	S	A	S	A	.	.	P	V	V	R	V
Query Conservation									.	.	.	.	.	.	.	.	.																																																										.	.
Alig confidence									.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.																					.	.
Template Conservation																																																	.	.	.	.	.	.
Template Sequence		A	Q	V	R	D	K	I	S	A	A	A	T	R	C	G	R	S	P	E	E	I	T	L	L	A	V	S	K	T	K	P	A	S	A	I	A	E	A	I	D	A	G	Q	R	Q	F	G	.	.	.	.	.	.	E	N	Y	V	Q	E	G	V	D	K	I	R	H	F	Q	E	L	G	V	T	G	L	E	W	H	F	I
Template Known Secondary structure															T	T			G	G	G								T	T	S											T	T						.	.	.	.	.	.		S	S														T	T			S
Template Predicted Secondary structure																																																	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.							.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		P	T	N	E	P	V	I	I	K	R	L	L	D	I	G	F	Y	N	F	L	I	P	F	V	E	T	K	E	E	A	E	L	A	V	A	S	T	R	Y	P	P	E	G	I	R	G	V	S	V	S	H	R	A	N	M	F	G	T	V	A	D	Y	F	A	Q	S	N	K	N	I	T	I	L	V	Q	I	E	S	Q	.
Query Conservation																																																																																	.
Alig confidence																.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation																.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	P	L	Q	S	N	K	S	R	L	V	A	E	H	.	.	.	F	D	W	C	H	T	I	D	R	L	R	I	A	T	R	L	N	D	Q	R	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	L	P	P	L	N	V	L	I	Q	I	N	I	S	D
Template Known Secondary structure		S				G	G	G								.	.	.		S							S											S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S												S
Template Predicted Secondary structure																.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.				.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.																											.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
												156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																							.																							.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																							.																							.
Query Sequence		.	.	.	.	.	.	.	.	.	.	Q	G	V	D	N	V	D	A	I	A	A	T	E	G	V	D	G	I	F	V	G	P	S	D	L	A	A	A	L	G	H	L	G	N	A	S	H	P	.	D	V	Q	K	A	I	Q	H	I	F	N	R	A	S	A	H	G	K	P	S	G	I	.	L	A	P	V	E	A	D	A
Query Conservation		.	.	.	.	.	.	.	.	.	.																																							.																							.
Alig confidence		.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.											.																							.
Template Conservation																																			.	.	.	.	.
Template Sequence		E	N	S	K	S	G	I	Q	L	A	E	L	D	E	L	A	A	A	V	A	E	L	P	R	L	R	L	R	G	L	M	A	I	.	.	.	.	.	P	A	P	E	S	E	Y	V	R	Q	F	E	V	A	R	Q	M	A	V	A	F	A	G	L	K	T	R	Y	P	H	I	D	T	L	S	L	G	M	S	D	D	M
Template Known Secondary structure		T	T				S	B		G	G	G										T		T	T										.	.	.	.	.																												S	T	T									G	G	G
Template Predicted Secondary structure																																			.	.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.						.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	Y	L	E	W	G	A	T	F	V	A	V	G	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	A	I	A	A	G	S	T	M	V	R	I	G	T
Template Known Secondary structure								T		S					S
Template Predicted Secondary structure
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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