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Job DescriptionP21170
Confidence99.64%DateThu Jan 5 11:37:56 GMT 2012
Rank31Aligned Residues249
% Identity11%Templatec3oo2B_
PDB info PDB header:isomeraseChain: B: PDB Molecule:alanine racemase 1; PDBTitle: 2.37 angstrom resolution crystal structure of an alanine racemase2 (alr) from staphylococcus aureus subsp. aureus col
Resolution2.37 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   81........90. ........100.........110.........120.........130. ........140.........150.....
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Query Sequence  AQGQRLPALFC. FPQILQHRLRSINAAFKRARESYGYNGDYFLVYPIKVNQH. . . . RRVIESLIHSGEPLGLEAGSKAEL
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Template Sequence  SDKYYRSAYMNVDLNAVASNFKVFSTLHPNK. . . . . . . . . . TVMAVVKANAYGLGSVKVARHLMENGAT. FFAVATLDEA
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   2.......10.........20.........30.. .......40.........50.........60 .........70
 
   156...160.........170.........180.........190.........200.........210.........220.........230.....
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Query Sequence  MAVLAHAGMTRSVIVCNGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLNVVPRLGVRARLASQGSGKWQS
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Template Sequence  IELRMHGITAKILVL. . GVLPAKDIDKAIQ. . . . . HRVALTVPSKQWLKEA. . . IKNISKKLWLHIKLD. . . . . . . . . . .
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   71........80..... ....90........ .100.........110.... .....120.........
 
   236...240.........250.........260.........270.........280.........290.........300.........310.....
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Query Sequence  SGGEKSKFGLAATQVLQLVETLREAGRLDSLQLLHFHLGSQMANIRDIATGVRESARFYVELHKLGVNIQCFDVGGGLGV
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Template Sequence  . TGMGRLGIKDTKTYQEVIEIIQQYEQLV. FEGVFTHFACADEPGDMTTEQYQRFKDMVNE. . . . AIKPEYIHCQNSAGS
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   134.....140.........150.........160. ........170.........180.........190.. .......200.......
 
   316...320.........330.........340.........350.........360.........370.........380....
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Query Sequence  DYEGTRSQSDCSVNYGLNEYANNIIWAIGDACEENGLPHPTVITESGRAVTAHHTVLVSNIIGVERNEY
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Template Sequence  LLMDCQFCNA. . . . . . . . . . . . . . . . . IRPGISLYGYYPSEYVQQKVKVHLKPSVQLIANVVQTKTLQA
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   208.210....... ..220.........230.........240.........250.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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