Job Description P21170 Confidence 99.64% Date Thu Jan 5 11:37:56 GMT 2012 Rank 31 Aligned Residues 249 % Identity 11% Template c3oo2B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:alanine racemase 1; PDBTitle: 2.37 angstrom resolution crystal structure of an alanine racemase2 (alr) from staphylococcus aureus subsp. aureus col Resolution 2.37 Å

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		81	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.					.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure													.																																									.	.	.	.
Query SS confidence													.																																									.	.	.	.
Query Sequence		A	Q	G	Q	R	L	P	A	L	F	C	.	F	P	Q	I	L	Q	H	R	L	R	S	I	N	A	A	F	K	R	A	R	E	S	Y	G	Y	N	G	D	Y	F	L	V	Y	P	I	K	V	N	Q	H	.	.	.	.	R	R	V	I	E	S	L	I	H	S	G	E	P	L	G	L	E	A	G	S	K	A	E	L
Query Conservation													.																																									.	.	.	.
Alig confidence													.																				.	.	.	.	.	.	.	.	.	.												.	.	.	.														.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.																													.
Template Sequence		S	D	K	Y	Y	R	S	A	Y	M	N	V	D	L	N	A	V	A	S	N	F	K	V	F	S	T	L	H	P	N	K	.	.	.	.	.	.	.	.	.	.	T	V	M	A	V	V	K	A	N	A	Y	G	L	G	S	V	K	V	A	R	H	L	M	E	N	G	A	T	.	F	F	A	V	A	T	L	D	E	A
Template Known Secondary structure							S	S																					S	T	T	S	.	.	.	.	.	.	.	.	.	.												T	T											T	T	T			.					S	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.																													.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.											.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	V	L	A	H	A	G	M	T	R	S	V	I	V	C	N	G	Y	K	D	R	E	Y	I	R	L	A	L	I	G	E	K	M	G	H	K	V	Y	L	V	I	E	K	M	S	E	I	A	I	V	L	D	E	A	E	R	L	N	V	V	P	R	L	G	V	R	A	R	L	A	S	Q	G	S	G	K	W	Q	S
Query Conservation
Alig confidence																	.	.														.	.	.	.	.																	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.														.	.	.	.	.																	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	E	L	R	M	H	G	I	T	A	K	I	L	V	L	.	.	G	V	L	P	A	K	D	I	D	K	A	I	Q	.	.	.	.	.	H	R	V	A	L	T	V	P	S	K	Q	W	L	K	E	A	.	.	.	I	K	N	I	S	K	K	L	W	L	H	I	K	L	D	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T			S						.	.	S				G	G	G							.	.	.	.	.	T	T		B													.	.	.	T	T	S											B		.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.														.	.	.	.	.																	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.						.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.				.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	G	E	K	S	K	F	G	L	A	A	T	Q	V	L	Q	L	V	E	T	L	R	E	A	G	R	L	D	S	L	Q	L	L	H	F	H	L	G	S	Q	M	A	N	I	R	D	I	A	T	G	V	R	E	S	A	R	F	Y	V	E	L	H	K	L	G	V	N	I	Q	C	F	D	V	G	G	G	L	G	V
Query Conservation
Alig confidence		.																													.																																.	.	.	.
Template Conservation		.																													.																																.	.	.	.
Template Sequence		.	T	G	M	G	R	L	G	I	K	D	T	K	T	Y	Q	E	V	I	E	I	I	Q	Q	Y	E	Q	L	V	.	F	E	G	V	F	T	H	F	A	C	A	D	E	P	G	D	M	T	T	E	Q	Y	Q	R	F	K	D	M	V	N	E	.	.	.	.	A	I	K	P	E	Y	I	H	C	Q	N	S	A	G	S
Template Known Secondary structure		.		S	S		S	S	S	B																	T	T			.									S		T	T	S		S	S														T	T	.	.	.	.	S				S
Template Predicted Secondary structure		.																													.																																.	.	.	.
Template SS confidence
			134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.					.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Y	E	G	T	R	S	Q	S	D	C	S	V	N	Y	G	L	N	E	Y	A	N	N	I	I	W	A	I	G	D	A	C	E	E	N	G	L	P	H	P	T	V	I	T	E	S	G	R	A	V	T	A	H	H	T	V	L	V	S	N	I	I	G	V	E	R	N	E	Y
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	M	D	C	Q	F	C	N	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	R	P	G	I	S	L	Y	G	Y	Y	P	S	E	Y	V	Q	Q	K	V	K	V	H	L	K	P	S	V	Q	L	I	A	N	V	V	Q	T	K	T	L	Q	A
Template Known Secondary structure							S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					G	G	G	G	T			S						T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.																		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions