Job Description P21170 Confidence 100.00% Date Thu Jan 5 11:37:56 GMT 2012 Rank 3 Aligned Residues 571 % Identity 35% Template c3nzpA_ PDB info PDB header:lyase Chain: A: PDB Molecule:arginine decarboxylase; PDBTitle: crystal structure of the biosynthetic arginine decarboxylase spea from2 campylobacter jejuni, northeast structural genomics consortium target3 br53 Resolution 3.00 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	N	I	A	W	W	G	N	N	Y	Y	D	V	N	E	L	G	H	I	S	V	C	P	D	P	D	V	P	E	A	R	V	D	L	A	Q	L	V	K	T	R	E	A	Q	G	Q	R	L	P	A	L	F	C	F	P	Q	I	L	Q	H	R	L	R	S	I	N	A	A	F	K	R	A	R	E	S	Y	G	Y	N	G
Query Conservation
Alig confidence																	.											.	.	.	.	.
Template Conservation																	.											.	.	.	.	.
Template Sequence		Y	G	I	D	I	W	G	N	E	N	F	I	I	K	N	.	G	K	V	C	I	N	Y	E	K	K	.	.	.	.	.	P	A	I	I	D	I	V	K	E	L	R	D	D	G	Y	K	G	P	L	L	L	R	F	P	H	L	I	Q	K	Q	I	E	N	I	Y	G	N	F	N	K	A	R	K	E	F	G	Y	K	G
Template Known Secondary structure		T	T	T	T	T	T	S	G	G	G					S	.	S	S				S	S	S	S		.	.	.	.	.		B											T	T			S																												T	T			S
Template Predicted Secondary structure																	.											.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.		.	20	.	.	.	.	.	.	.	.						.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																												.	.
Query SS confidence																												.	.
Query Sequence		D	Y	F	L	V	Y	P	I	K	V	N	Q	H	R	R	V	I	E	S	L	I	H	S	G	E	P	.	.	L	G	L	E	A	G	S	K	A	E	L	M	A	V	L	A	H	A	G	M	T	R	S	V	I	V	C	N	G	Y	K	D	R	E	Y	I	R	L	A	L	I	G	E	K	M	G	H	K	V	Y	L	V
Query Conservation																												.	.
Alig confidence																												.	.																											.
Template Conservation																																																								.
Template Sequence		G	F	N	A	V	Y	P	L	K	V	N	Q	Y	P	G	F	V	K	N	L	V	K	L	G	K	D	Y	N	Y	G	L	E	A	G	S	K	A	E	L	L	L	A	X	A	Y	N	N	E	G	A	P	I	T	V	.	N	G	F	K	D	R	E	L	I	N	I	G	F	I	A	A	E	X	G	H	N	I	T	L	T
Template Known Secondary structure									G	G	G														T	G	G	G	T							S											S		T	T	S					.		S																T	T
Template Predicted Secondary structure																																																								.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		I	E	K	M	S	E	I	A	I	V	L	D	E	A	E	R	.	L	N	V	V	P	R	L	G	V	R	A	R	L	A	S	Q	G	S	G	K	W	Q	S	S	G	G	E	K	S	K	F	G	L	A	A	T	Q	V	L	Q	L	V	E	T	L	R	E	A	G	R	L	D	S	L	Q	L	L	H	F	H	L	G	S
Query Conservation																		.
Alig confidence																		.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	E	G	L	N	E	L	E	A	I	I	D	I	A	K	E	R	F	K	P	K	P	N	I	G	L	R	V	R	L	H	S	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	F	G	L	T	S	T	E	L	I	E	A	V	N	L	L	K	E	N	K	L	L	E	Q	F	T	X	I	H	F	H	L	G	S
Template Known Secondary structure			S	S												T	T	S		S									B			T	T	.	.	.	.	.	.	.	.	.	.	.	.	.				S	B															T	T		T	T	T										S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.														.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		Q	M	A	N	I	R	D	I	A	T	G	V	R	E	S	A	R	F	Y	V	E	L	H	K	L	G	V	.	N	I	Q	C	F	D	V	G	G	G	L	G	V	D	Y	E	G	T	R	S	Q	S	D	C	S	V	N	Y	G	L	N	E	Y	A	N	N	I	I	W	A	I	G	D	A	C	E	E	N	G	L	P	H
Query Conservation																													.
Alig confidence																													.																					.	.
Template Conservation																																																		.	.
Template Sequence		Q	I	T	E	I	H	P	L	K	K	A	L	N	E	A	G	N	I	Y	T	E	L	R	K	X	G	A	K	N	L	K	A	I	N	L	G	G	G	L	A	V	E	Y	S	Q	F	K	N	.	.	E	K	S	R	N	Y	T	L	R	E	Y	A	N	D	V	V	F	I	L	K	N	I	A	E	Q	K	K	D	L	E
Template Known Secondary structure			B			S																				T	T		T	T								S		B							S	S	S	.	.			S		S	S																				T	T
Template Predicted Secondary structure																																																		.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.			.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390		.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		P	T	V	I	T	E	S	G	R	A	V	T	A	H	H	T	V	L	V	S	N	I	I	G	V	E	R	N	E	Y	T	V	P	T	A	P	.	A	E	D	A	P	R	A	L	Q	S	M	W	E	T	W	Q	E	M	H	E	P	G	T	R	R	S	L	R	E	W	L	H	D	S	Q	M	D	L	H	D	I	H	I
Query Conservation																																						.
Alig confidence																																						.																			.	.	.	.
Template Conservation																																																									.	.	.	.
Template Sequence		P	D	I	F	I	E	S	G	R	F	V	A	A	N	H	A	V	L	I	A	P	V	L	E	L	F	S	Q	E	Y	A	E	N	K	L	I	L	K	K	Q	N	P	K	L	I	D	E	L	Y	D	L	Y	K	S	I	.	.	.	.	K	P	S	N	A	L	E	Y	L	H	D	S	I	D	H	L	E	S	I	L	T
Template Known Secondary structure														G	G	G																	G	G	G	S				S	S																.	.	.	.		T	T	T
Template Predicted Secondary structure																																																									.	.	.	.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.					370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	S	S	G	I	F	S	L	Q	E	R	A	W	A	E	Q	L	Y	L	S	M	C	H	E	V	Q	K	Q	L	D	P	Q	N	R	A	H	R	P	I	I	D	E	L	Q	E	R	M	A	D	K	M	Y	V	N	F	S	L	F	Q	S	M	P	D	A	W	G	I	D	Q	L	F	P	V	L	P	L	E	G	L
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	F	D	L	G	Y	V	D	L	Q	D	R	S	N	A	E	I	L	T	H	L	I	T	K	K	A	I	L	L	L	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	Q	E	R	Y	L	V	N	F	S	L	F	Q	S	X	P	D	F	W	G	L	E	Q	N	F	P	I	X	P	L	D	R	L
Template Known Secondary structure				T	T	T	S	S																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	B					S	S		T	T	T	T							S	S								S	S		T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.																.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.		.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		D	Q	V	P	E	R	R	A	V	L	L	D	I	T	C	D	S	D	G	A	I	D	H	Y	I	D	G	D	G	I	A	T	T	M	P	M	P	E	Y	D	.	P	E	N	P	P	M	L	G	F	F	M	V	G	A	Y	Q	E	I	L	G	N	M	H	N	L	F	G	D	T	E	A	V	D	V	F	V	F	P	D
Query Conservation																																										.
Alig confidence																												.	.	.	.	.										.
Template Conservation																												.	.	.	.	.
Template Sequence		D	E	E	P	T	R	S	A	S	I	W	D	I	T	C	D	S	D	G	E	I	S	Y	S	K	D	.	.	.	.	.	K	P	L	F	L	H	D	V	D	V	E	K	E	N	Y	F	L	G	F	F	L	V	G	A	Y	Q	E	V	L	G	X	K	H	N	L	F	T	H	P	T	E	A	I	I	S	I	N	E	K
Template Known Secondary structure		T	S					B	B					S		S		T	T	S	B					S	S	.	.	.	.	.	S			B						T	T	T	S								S		S	S	S	T	T	T	T				T	T	S													S	S
Template Predicted Secondary structure																												.	.	.	.	.
Template SS confidence
		469	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.						.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
		593	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.		630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		G	S	V	E	V	E	L	S	D	E	G	D	T	V	A	D	M	L	Q	Y	V	Q	L	D	P	K	T	L	L	T	Q	F	R	D	Q	V	K	.	K	T	D	L	D	A	E	L	Q	Q	Q	F	L	E	E	F	E	A	G	L	Y	G	Y	T	Y	L	E
Query Conservation																																							.
Alig confidence			.																																				.
Template Conservation			.
Template Sequence		G	.	Y	E	V	E	G	I	I	E	A	Q	S	I	L	D	T	L	E	D	L	D	Y	D	I	H	A	I	X	D	I	L	N	E	R	I	S	N	S	K	L	V	N	D	K	Q	K	K	H	I	L	G	E	L	Y	L	F	L	N	D	N	G	Y	L	K
Template Known Secondary structure			.																			T	T																S		S	S	S																	T	S		S	S
Template Predicted Secondary structure			.
Template SS confidence
		544		.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.