Job Description P21170 Confidence 100.00% Date Thu Jan 5 11:37:56 GMT 2012 Rank 2 Aligned Residues 625 % Identity 55% Template c3n2oA_ PDB info PDB header:lyase Chain: A: PDB Molecule:biosynthetic arginine decarboxylase; PDBTitle: x-ray crystal structure of arginine decarboxylase complexed with2 arginine from vibrio vulnificus Resolution 2.30 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	S	K	M	L	R	T	Y	N	I	A	W	W	G	N	N	Y	Y	D	V	N	E	L	G	H	I	S	V	C	P	D	P	D	V	P	E	A	R	V	D	L	A	Q	L	V	K	T	R	E	A	Q	G	Q	R	L	P	A	L	F	C	F	P	Q	I	L	Q	H	R	L	R	S	I	N	A	A	F	K	R	A
Query Conservation
Alig confidence																																				.
Template Conservation																																				.
Template Sequence		K	L	D	R	V	R	A	D	Y	N	V	H	Y	W	S	Q	G	F	Y	G	I	D	D	Q	G	E	M	Y	V	S	P	R	S	D	.	N	A	H	Q	I	Q	L	S	K	I	V	K	Q	L	E	E	R	Q	L	N	V	P	V	L	V	R	F	P	Q	I	L	H	Q	R	V	H	S	I	C	D	A	F	N	Q	A
Template Known Secondary structure												T					T	T	S					T	T	S							S	T	T	.																	T	T			S	S
Template Predicted Secondary structure																																				.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.						.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.
Query SS confidence																																					.	.	.	.	.
Query Sequence		R	E	S	Y	G	Y	N	G	D	Y	F	L	V	Y	P	I	K	V	N	Q	H	R	R	V	I	E	S	L	I	H	S	G	E	P	L	.	.	.	.	.	G	L	E	A	G	S	K	A	E	L	M	A	V	L	A	H	A	G	M	T	R	S	V	I	V	C	N	G	Y	K	D	R	E	Y	I	R	L	A	L	I
Query Conservation																																					.	.	.	.	.
Alig confidence																																					.	.	.	.	.
Template Conservation
Template Sequence		I	E	E	Y	Q	Y	P	N	K	Y	L	L	V	Y	P	I	K	V	N	Q	Q	R	E	V	V	D	E	I	L	A	S	Q	A	Q	L	E	T	K	Q	L	G	L	E	A	G	S	K	P	E	L	L	A	V	L	A	M	A	Q	H	A	S	S	V	I	V	C	N	G	Y	K	D	R	E	Y	I	R	L	A	L	I
Template Known Secondary structure						T		S	S								G	G	G																	S	T	T									S											T	S	S	S								S
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	K	M	G	H	K	V	Y	L	V	I	E	K	M	S	E	I	A	I	V	L	D	E	A	E	R	L	N	V	V	P	R	L	G	V	R	A	R	L	A	S	Q	G	S	G	K	W	Q	S	S	G	G	E	K	S	K	F	G	L	A	A	T	Q	V	L	Q	L	V	E	T	L	R	E	A	G	R	L	D	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	K	L	G	H	K	V	F	I	V	L	E	K	M	S	E	L	D	L	V	L	R	E	A	K	S	L	G	V	T	P	R	L	G	I	R	I	R	L	A	S	Q	G	A	G	K	W	Q	A	S	G	G	E	K	S	K	F	G	L	S	A	S	Q	V	L	N	V	I	S	R	L	K	K	E	N	Q	L	D	T
Template Known Secondary structure					T	T									S	T														T									B			S	T	T	S	T	T	T	T		S	S	S	S							B															T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	L	L	H	F	H	L	G	S	Q	M	A	N	I	R	D	I	A	T	G	V	R	E	S	A	R	F	Y	V	E	L	H	K	L	G	V	N	I	Q	C	F	D	V	G	G	G	L	G	V	D	Y	E	G	T	R	S	Q	S	D	C	S	V	N	Y	G	L	N	E	Y	A	N	N	I	I	W	A	I	G	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q	L	V	H	F	H	L	G	S	Q	M	A	N	I	R	D	V	R	N	G	V	N	E	S	A	R	F	Y	C	E	L	R	T	L	G	A	N	I	T	Y	F	D	V	G	G	G	L	A	I	D	Y	D	G	T	R	S	Q	S	S	N	S	M	N	Y	G	L	V	E	Y	A	R	N	I	V	N	T	V	G	D
Template Known Secondary structure											S	S	B																							T	T										S		B				T	T	S				S	S	T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	C	E	E	N	G	L	P	H	P	T	V	I	T	E	S	G	R	A	V	T	A	H	H	T	V	L	V	S	N	I	I	G	V	E	R	N	E	Y	T	V	P	T	A	P	A	E	D	A	P	R	A	L	Q	S	M	W	E	T	W	Q	E	M	H	E	P	G	T	R	R	S	L	R	E	W	L	H	D	S	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	C	K	D	Y	K	Q	P	M	P	V	I	I	S	E	S	G	R	S	L	T	A	H	H	A	V	L	I	S	N	V	I	G	T	E	T	Y	K	P	E	T	V	T	E	P	E	E	D	F	P	L	L	L	N	N	M	W	R	S	W	L	N	L	H	N	G	T	D	A	R	A	L	I	E	I	Y	N	D	T	Q
Template Known Secondary structure							T																G	G	G																							T	T														T		S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	L	H	D	I	H	I	G	Y	S	S	G	I	F	S	L	Q	E	R	A	W	A	E	Q	L	Y	L	S	M	C	H	E	V	Q	K	Q	L	D	P	Q	N	R	A	H	R	P	I	I	D	E	L	Q	E	R	M	A	D	K	M	Y	V	N	F	S	L	F	Q	S	M	P	D	A	W	G	I	D	Q	L	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	D	L	A	E	V	H	S	Q	F	A	T	G	V	L	T	L	E	H	R	A	W	A	E	Q	T	S	L	R	I	Y	Y	E	L	N	R	L	M	S	T	K	N	R	F	H	R	P	I	L	D	E	L	S	E	R	L	A	D	K	F	F	V	N	F	S	L	F	Q	S	L	P	D	S	W	G	I	D	Q	V	F
Template Known Secondary structure													T	T	S	S																							S		T	T	S	T	T												T							S	S
Template Predicted Secondary structure
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
		506	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	L	P	L	E	G	L	D	Q	V	P	E	R	R	A	V	L	L	D	I	T	C	D	S	D	G	A	I	D	H	Y	I	D	G	D	G	I	A	T	T	M	P	M	P	E	Y	D	P	E	N	P	P	M	L	G	F	F	M	V	G	A	Y	Q	E	I	L	G	N	M	H	N	L	F	G	D	T	E	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	V	L	P	L	S	G	L	Q	N	A	A	D	R	R	A	V	M	L	D	I	T	C	D	S	D	G	A	I	D	A	Y	V	D	G	Q	G	I	E	S	T	L	P	V	P	A	W	N	E	D	E	P	Y	L	M	G	F	F	L	V	G	A	Y	Q	E	I	L	G	D	M	H	N	L	F	G	D	T	H	S	V
Template Known Secondary structure						S	S		G	G	G	T	T	S								S	S	S		T	T		B							T	T				S	S								T	T	S								S			S	S								G	G	G
Template Predicted Secondary structure
Template SS confidence
		489	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.
		586	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	F	V	F	P	D	G	S	V	E	V	E	L	S	D	E	G	D	T	V	A	D	M	L	Q	Y	V	Q	L	D	P	K	T	L	L	T	Q	F	R	D	Q	V	K	K	T	D	L	D	A	E	L	Q	Q	Q	F	L	E	E	F	E	A	G	L	Y	G	Y	T	Y	L	E	D
Query Conservation
Alig confidence																																																.
Template Conservation																																																.
Template Sequence		V	V	N	V	G	D	Q	G	E	I	N	I	D	F	I	N	E	G	D	T	V	E	D	M	M	R	Y	V	H	I	D	V	D	Q	I	R	K	N	Y	H	S	L	V	S	Q	R	.	V	D	Q	E	E	Q	Q	Q	I	L	A	E	L	E	Q	G	L	S	G	Y	T	Y	L	E	D
Template Known Secondary structure							T	T	S												B								T	T																		.	S																		S	B	S	S
Template Predicted Secondary structure																																																.
Template SS confidence
		569	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.		.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.