Job Description P21170 Confidence 99.85% Date Thu Jan 5 11:37:56 GMT 2012 Rank 27 Aligned Residues 257 % Identity 14% Template c3gwqB_ PDB info PDB header:lyase Chain: B: PDB Molecule:d-serine deaminase; PDBTitle: crystal structure of a putative d-serine deaminase (bxe_a4060) from2 burkholderia xenovorans lb400 at 2.00 a resolution Resolution 2.00 Å

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		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	A	Q	G	Q	R	L	P	A	L	F	C	F	P	Q	I	L	Q	H	R	L	R	S	I	N	A	A	F	K	R	A	R	E	S	Y	G	Y	N	G	D	Y	F	L	V	Y	P	I	K	V	N	Q	H	R	R	V	I	E	S	L	I	H	S	G	E	P	L	G	L	E	A	G	S	K	A	E	L	M	A	V
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.																											.
Template Conservation																																		.	.	.	.	.	.	.	.																											.
Template Sequence		L	L	N	E	D	V	S	L	P	A	A	V	L	Y	A	D	R	V	E	H	N	L	K	W	X	Q	A	F	V	A	E	Y	.	.	.	.	.	.	.	.	G	V	K	L	A	P	H	G	K	T	T	X	A	P	Q	L	F	R	R	Q	L	E	T	G	A	W	.	G	I	T	L	A	T	A	H	Q	V	R	A	A
Template Known Secondary structure		T	T	T	T		S		S	S																						S	S	.	.	.	.	.	.	.	.	S						B		T	T	T												T	T			.					S	S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.																											.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.									70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	H	A	G	M	T	R	S	V	I	V	C	N	G	Y	K	D	R	E	Y	I	R	L	A	L	I	G	E	K	M	G	H	K	V	Y	L	V	I	E	K	M	S	E	I	A	I	V	L	D	E	A	E	R	L	N	V	V	P	R	L	G	V	R	A	R	L	A	S	Q	G	S	G	K	W	Q	S	S	G	G
Query Conservation
Alig confidence								.																																																																.	.	.	.	.	.	.	.	.	.
Template Conservation								.																																																																.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	H	G	G	V	S	.	R	V	L	X	A	N	Q	L	V	G	R	R	N	X	X	X	V	A	E	L	L	S	D	P	E	F	E	F	F	C	L	V	D	S	V	E	G	V	E	Q	L	G	E	F	F	K	S	V	N	K	Q	L	Q	V	L	L	E	L	G	V	P	G	G	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T			.										S									T	T	T	T		T	T																							T	T												T	T	S	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.																																																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		109	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		239	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.				300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure									.																																																							.	.	.
Query SS confidence									.																																																							.	.	.
Query Sequence		E	K	S	K	F	G	L	.	A	A	T	Q	V	L	Q	L	V	E	T	L	R	E	A	G	R	L	D	S	L	Q	L	L	H	F	H	L	G	S	Q	M	A	N	I	R	D	I	A	T	G	V	R	E	S	A	R	F	Y	V	E	L	H	K	.	.	.	L	G	V	N	I	Q	C	F	D	V	G	G	G	L	G
Query Conservation									.																																																							.	.	.
Alig confidence		.	.	.					.																															.																								.	.	.
Template Conservation		.	.	.																																				.
Template Sequence		.	.	.	R	T	G	V	R	D	A	A	Q	R	N	A	V	L	E	A	I	T	R	Y	P	D	T	L	K	L	A	G	V	E	L	Y	E	G	V	.	L	K	E	E	H	E	V	R	E	F	L	Q	S	A	V	A	V	T	R	E	L	V	E	Q	E	R	F	A	R	A	P	A	V	L	S	G	A	G	S	A	W
Template Known Secondary structure		.	.	.	S	S	S	B		S													T	S	T	T	T										G	G	G	.			S																					T	T			S	S	S	S								S	T	T
Template Predicted Secondary structure		.	.	.																																				.
Template SS confidence
					178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370						.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.
Query Sequence		V	D	Y	E	G	T	R	S	Q	S	D	C	S	V	N	Y	G	L	N	E	Y	A	N	N	I	I	W	A	I	G	D	A	C	E	E	N	G	L	P	H	P	T	V	I	T	E	S	G	R	A	V	T	A	H	H	T	.	.	.	.	.	V	L	V	S	N	I	I	G	V	E	R	N	E
Query Conservation																																																										.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	E	E	F	V	K	A	S	E	T	G	K	V	E	V	V	L	R	P	G	C	Y	L	T	X	G	E	G	L	L	P	A	L	Q	L	W	A	Y	V	Q	S	I	P	E	P	D
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T	S	S										S					T	T																	T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		254	.	.																									.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions