Job Description P21170 Confidence 100.00% Date Thu Jan 5 11:37:56 GMT 2012 Rank 4 Aligned Residues 422 % Identity 24% Template c2o0tB_ PDB info PDB header:lyase Chain: B: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: the three dimensional structure of diaminopimelate decarboxylase from2 mycobacterium tuberculosis reveals a tetrameric enzyme organisation Resolution 2.33 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	G	N	N	Y	Y	D	V	N	E	L	G	H	I	S	V	C	P	D	P	D	V	P	E	A	R	V	D	L	A	Q	L	V	K	T	R	E	A	Q	G	Q	R	L	P	A	L	F	C	F	P	Q	I	L	Q	H	R	L	R	S	I	N	A	A	F	K	R	A	R	E	S	Y	G	Y	N	G	D	Y	F	L	V
Query Conservation
Alig confidence						.												.	.	.	.	.	.	.	.												.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Template Conservation						.												.	.	.	.	.	.	.	.												.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Template Sequence		W	P	R	N	.	T	T	R	D	E	V	G	V	V	C	I	.	.	.	.	.	.	.	.	A	G	I	P	L	T	Q	L	A	Q	E	.	.	.	.	.	Y	G	T	P	L	F	V	I	D	E	D	D	F	R	S	R	C	R	E	T	A	A	A	F	.	.	.	.	.	.	.	.	.	.	G	S	G	A	N	V
Template Known Secondary structure		S		T	T	.					S	S	S					.	.	.	.	.	.	.	.	T	T										.	.	.	.	.			S	S																				T	.	.	.	.	.	.	.	.	.	.	T	S	G	G	G	B
Template Predicted Secondary structure						.												.	.	.	.	.	.	.	.												.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		12	.	.	.		.	.	.	.	20	.	.	.	.	.	.									.	.	.	30	.	.	.	.	.	.	.						.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.											.	.	.	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	P	I	K	V	N	Q	H	R	R	V	I	E	S	L	I	H	S	G	E	P	L	G	L	E	A	G	S	K	A	E	L	M	A	V	L	A	H	A	G	M	T	R	S	V	I	V	C	N	G	Y	K	D	R	E	Y	I	R	L	A	L	I	G	E	K	M	G	H	K	V	Y	L	V	I	E	K	M	S	E	I
Query Conservation
Alig confidence																						.	.																																								.	.	.							.
Template Conservation																						.	.																																								.	.	.							.
Template Sequence		H	Y	A	A	A	F	L	C	S	E	V	A	R	W	I	S	E	E	G	L	.	.	C	L	D	V	C	T	G	G	E	L	A	V	A	L	H	A	S	F	P	P	E	R	I	T	L	H	G	N	N	K	S	V	S	E	L	T	A	A	V	.	.	.	K	A	G	V	G	H	.	I	V	V	D	S	M	T	E	I
Template Known Secondary structure																				T		.	.						S										T	T			G	G	G						S	S											.	.	.			T		S		.					S
Template Predicted Secondary structure																						.	.																																								.	.	.							.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.			.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.				.	.	.	130	.	.		.	.	.	.	.	.	.	140	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.			.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure																															.																						.	.
Query SS confidence																															.																						.	.
Query Sequence		A	I	V	L	D	E	A	E	R	L	N	V	V	P	R	L	G	V	R	A	R	L	A	S	Q	G	S	G	K	.	W	Q	S	S	G	G	E	K	S	K	F	G	L	A	A	T	Q	V	L	Q	L	.	.	V	E	T	L	R	E	A	G	R	L	D	S	L	Q	L	L	H	F	H	L	G	S	Q	M	A	N	I
Query Conservation																															.																						.	.
Alig confidence																															.																						.	.												.
Template Conservation																																																																		.
Template Sequence		E	R	L	D	A	I	A	G	E	A	G	I	V	Q	D	V	L	V	R	L	T	V	G	V	E	A	H	T	H	E	F	I	S	T	A	H	E	D	Q	K	F	G	L	S	V	A	S	G	A	A	M	A	A	V	R	R	V	F	A	T	D	H	L	R	.	L	V	G	L	H	S	H	I	G	S	Q	I	F	D	V
Template Known Secondary structure												T												S						T						S	S			S	S	S	S			T	T	T	T													S	S			.															S
Template Predicted Secondary structure																																																																		.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.						.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.
Query SS confidence																			.	.	.	.	.
Query Sequence		R	D	I	A	T	G	V	R	E	S	A	R	F	Y	V	E	L	.	.	.	.	.	H	K	L	G	V	N	I	Q	C	F	D	V	G	G	G	L	G	V	D	Y	E	G	T	R	S	Q	S	D	C	S	V	N	Y	G	L	N	E	Y	A	N	N	I	I	W	A	I	G	D	A	C	E	E	N	G	L	P	H	P
Query Conservation																			.	.	.	.	.
Alig confidence																			.	.	.	.	.																					.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.
Template Sequence		D	G	F	E	L	A	A	H	R	V	I	G	L	L	R	D	V	V	G	E	F	G	P	E	K	T	A	Q	I	A	T	V	D	L	G	G	G	L	G	I	S	Y	.	.	.	.	.	.	L	P	S	D	D	P	P	P	I	A	E	L	A	A	K	L	G	T	I	V	S	D	E	S	T	A	V	G	L	P	T	P
Template Known Secondary structure																											S	T	T										B				S	.	.	.	.	.	.	S	T	T																								T	T
Template Predicted Secondary structure																																												.	.	.	.	.	.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.							.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	I	T	E	S	G	R	A	V	T	A	H	H	T	V	L	V	S	N	I	I	G	V	E	R	N	E	Y	T	V	P	T	A	P	A	E	D	A	P	R	A	L	Q	S	M	W	E	T	W	Q	E	M	H	E	P	G	T	R	R	S	L	R	E	W	L	H	D	S	Q	M	D	L	H	D	I	H	I	G	Y
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	L	V	V	E	P	G	R	A	I	A	G	P	G	T	I	T	L	Y	E	V	G	T	V	K	D	V	D	V	S	A	T	A	H	R	R	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					B			S					S	T	T																S	S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	G	I	F	S	L	Q	E	R	A	W	A	E	Q	L	Y	L	S	M	C	H	E	V	Q	K	Q	L	D	P	Q	N	R	A	H	R	P	I	I	D	E	L	Q	E	R	M	A	D	K	M	Y	V	N	F	S	L	F	Q	S	M	P	D	A	W	G	I	D	Q	L	F	P	V	L	P	L	E	G	L	D	Q
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	V	D	G	G	M	S	D	N	I	R	T	A	L	.	Y	G	A	Q	Y	D	V	R	L	V	S	R	V	S	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S			T	T	T							.											S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template SS confidence
																																																			333	.	.	.	.	.	.	340	.	.	.	.	.	.	.		.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		516	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550		.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		V	P	E	R	R	A	V	L	L	D	I	T	C	D	S	D	G	A	I	D	H	Y	I	D	G	D	G	I	A	T	T	M	P	M	P	.	E	Y	D	P	E	N	P	P	M	L	G	F	F	M	V	G	A	Y	Q	E	I	L	G	N	M	H	N	L	F	G	D	T	E	A	V	D	V	F	V	F	P	D	G	S
Query Conservation																																					.
Alig confidence																					.	.	.	.	.	.	.	.	.								.							.	.																															.				.	.
Template Conservation																					.	.	.	.	.	.	.	.	.															.	.																															.				.	.
Template Sequence		A	P	P	V	P	A	R	L	V	G	K	H	C	E	S	G	D	I	I	.	.	.	.	.	.	.	.	.	V	R	D	T	W	V	P	D	D	I	R	P	G	D	.	.	L	V	A	V	A	A	T	G	A	Y	C	Y	S	L	S	S	R	Y	N	M	V	G	R	P	A	V	V	A	V	H	.	A	G	N	.	.
Template Known Secondary structure		S										S	S	S	S	T	T				.	.	.	.	.	.	.	.	.								T	T			T	T		.	.					S			S	S	S	S	S	T	T				G	G	G											.	T	T		.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.															.	.																															.				.	.
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.										.	.	.	.	.	.	.	.	390	.	.	.	.	.			.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.		.	.	.
		595	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	V	E	L	S	D	E	G	D	T	V	A	D	M	L	Q
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	A	R	L	V	L	R	R	E	T	V	D	D	L	L	S
Template Known Secondary structure		.	.															T
Template Predicted Secondary structure		.	.
Template SS confidence
				429	430	.	.	.	.	.	.	.	.	.	440	.	.	.