Job Description P21170 Confidence 99.77% Date Thu Jan 5 11:37:56 GMT 2012 Rank 29 Aligned Residues 231 % Identity 17% Template c1xfcB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: the 1.9 a crystal structure of alanine racemase from mycobacterium2 tuberculosis contains a conserved entryway into the active site Resolution 1.90 Å

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		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130					.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																												.	.	.	.
Query SS confidence																																												.	.	.	.
Query Sequence		L	F	C	F	P	Q	I	L	Q	H	R	L	R	S	I	N	A	A	F	K	R	A	R	E	S	Y	G	Y	N	G	D	Y	F	L	V	Y	P	I	K	V	N	Q	.	.	.	.	H	R	R	V	I	E	S	L	I	H	S	G	E	P	L	G	L	E	A	G	S	K	A	E	L	M	A	V	L	A	H	A	G	M
Query Conservation																																												.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.											.	.	.	.															.
Template Conservation																								.	.	.	.	.	.	.	.	.	.																													.
Template Sequence		A	M	V	D	L	G	A	I	E	H	N	V	R	V	L	R	E	H	A	G	H	A	.	.	.	.	.	.	.	.	.	.	Q	L	M	A	V	V	K	A	D	G	Y	G	H	G	A	T	R	V	A	Q	T	A	L	G	A	G	A	A	.	E	L	G	V	A	T	V	D	E	A	L	A	L	R	A	D	G	I	T
Template Known Secondary structure																					T	T	S	.	.	.	.	.	.	.	.	.	.												T	T												T	T			.					S											T	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.																													.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.											.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	S	V	I	V	C	N	G	Y	K	D	R	E	Y	I	R	L	A	L	I	G	E	K	M	G	H	K	V	Y	L	V	I	E	K	M	S	E	I	A	I	V	L	D	E	A	E	R	L	N	V	V	P	R	L	G	V	R	A	R	L	A	S	Q	G	S	G	K	W	Q	S	S	G	G	E	K	S	K	F	G
Query Conservation
Alig confidence															.	.							.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.							.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	P	V	L	A	W	L	H	P	P	G	I	D	.	.	F	G	P	A	L	L	.	.	.	.	.	A	D	V	Q	V	A	V	S	S	L	R	Q	L	D	E	L	L	H	A	V	R	R	T	G	R	T	A	T	V	T	V	K	V	D	T	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	N	G
Template Known Secondary structure		S									T	T			.	.							.	.	.	.	.	T	T							S															T									B		S	S		.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S
Template Predicted Secondary structure															.	.							.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.			.	.	.	.	100	.						.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.														.	140	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.				260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																	.	.	.																												.
Query SS confidence																	.	.	.																												.
Query Sequence		L	A	A	T	Q	V	L	Q	L	V	E	T	L	R	E	.	.	.	A	G	R	L	D	S	L	Q	L	L	H	F	H	L	G	S	Q	M	A	N	I	R	D	I	A	T	G	.	V	R	E	S	A	R	F	Y	V	E	L	H	K	L	G	V	N	I	Q	C	F	D	V	G	G	G	L	G	V	D	Y	E	G	T
Query Conservation																	.	.	.																												.
Alig confidence																	.	.	.						.																						.																																.	.	.
Template Conservation																									.																																																						.	.	.
Template Sequence		V	G	P	A	Q	F	P	A	M	L	T	A	L	R	Q	A	M	A	E	D	A	V	R	.	L	R	G	L	M	S	H	M	V	Y	A	D	K	P	D	D	S	I	N	D	V	Q	A	Q	R	F	T	A	F	L	A	Q	A	R	E	Q	G	V	R	F	E	V	A	H	L	S	N	S	S	A	T	M	A	.	.	.
Template Known Secondary structure		B		T	T	T														T	T	S			.									S		S	S		T	T	S																				T	T				S													.	.	.
Template Predicted Secondary structure																									.																																																						.	.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.		.	.	360	.	.	.	.	.	.	.														.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																																							.											.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.											.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	S	Q	S	D	C	S	V	N	Y	G	L	N	E	Y	A	N	N	I	I	W	A	I	G	D	A	C	E	E	N	G	L	P	H	P	T	V	.	I	T	E	S	G	R	A	V	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	H	H	T	V	L	V	S	N	I	I	G	V	E	R	N	E	Y	T
Query Conservation																																							.											.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	D	L	T	F	D	L	V	R	P	G	I	A	V	Y	G	L	S	P	V	P	A	L	G	D	M	G	L	V	P	A	M	T	V	K	C	A	V	A	L	V	K	S	I	R	D	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G			S						G	G	G	G	T			S	S	G	G	G		S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																	219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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